Gene : SIGF A. thaliana TAIR10
Primary Identifier:  ? AT2G36990 Defline:  (1 of 6) PF04539 - Sigma-70 region 3 (Sigma70_r3)
Genomic Order:  3056 Name:  ? AT2G36990
Secondary Identifier:  ? PAC:19642562
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0 Pathways

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G36990 0.5kb upstream 0.5kb upstream 3382 true Chr2: 15537258-15540639 Arabidopsis thaliana
AT2G36990 0.5kb upstream 0.5kb upstream 500 false Chr2: 15540140-15540639 Arabidopsis thaliana
AT2G36990 0.5kb downstream 0.5kb downstream 3382 true Chr2: 15536758-15540139 Arabidopsis thaliana
AT2G36990 0.5kb downstream 0.5kb downstream 500 false Chr2: 15536758-15537257 Arabidopsis thaliana
AT2G36990 1.0kb upstream 1.0kb upstream 3882 true Chr2: 15537258-15541139 Arabidopsis thaliana
AT2G36990 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15540140-15541139 Arabidopsis thaliana
AT2G36990 1.0kb downstream 1.0kb downstream 3882 true Chr2: 15536258-15540139 Arabidopsis thaliana
AT2G36990 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15536258-15537257 Arabidopsis thaliana
AT2G36990 2.0kb upstream 2.0kb upstream 4882 true Chr2: 15537258-15542139 Arabidopsis thaliana
AT2G36990 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15540140-15542139 Arabidopsis thaliana
AT2G36990 2.0kb downstream 2.0kb downstream 4882 true Chr2: 15535258-15540139 Arabidopsis thaliana
AT2G36990 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15535258-15537257 Arabidopsis thaliana
AT2G36990 5.0kb upstream 5.0kb upstream 7882 true Chr2: 15537258-15545139 Arabidopsis thaliana
AT2G36990 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15540140-15545139 Arabidopsis thaliana
AT2G36990 5.0kb downstream 5.0kb downstream 7882 true Chr2: 15532258-15540139 Arabidopsis thaliana
AT2G36990 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15532258-15537257 Arabidopsis thaliana
AT2G36990 10.0kb upstream 10.0kb upstream 12882 true Chr2: 15537258-15550139 Arabidopsis thaliana
AT2G36990 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15540140-15550139 Arabidopsis thaliana
AT2G36990 10.0kb downstream 10.0kb downstream 12882 true Chr2: 15527258-15540139 Arabidopsis thaliana
AT2G36990 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15527258-15537257 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364500 5261 Brassicaceae View MSA
123832636 5264 Brassicales-Malvales View MSA
124351655 5266 SBM View MSA
124237250 5268 Malvidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.239     High  
cufflinks 2.449        
cufflinks 42.731     High High
cufflinks 2.41        
cufflinks 28.407     High  
cufflinks 1.793       Low

0 Strain