Gene : Glyma.10G149400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22937:SF39 - E3 UBIQUITIN-PROTEIN LIGASE TOPORS-RELATED Genomic Order:  1494
Name:  ? Glyma.10G149400 Secondary Identifier:  ? PAC:30477471
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G149400 0.5kb upstream 0.5kb upstream 3774 true Chr10: 38469764-38473537 Glycine max
Glyma.10G149400 0.5kb upstream 0.5kb upstream 500 false Chr10: 38473038-38473537 Glycine max
Glyma.10G149400 0.5kb downstream 0.5kb downstream 3774 true Chr10: 38469264-38473037 Glycine max
Glyma.10G149400 0.5kb downstream 0.5kb downstream 500 false Chr10: 38469264-38469763 Glycine max
Glyma.10G149400 1.0kb upstream 1.0kb upstream 4274 true Chr10: 38469764-38474037 Glycine max
Glyma.10G149400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 38473038-38474037 Glycine max
Glyma.10G149400 1.0kb downstream 1.0kb downstream 4274 true Chr10: 38468764-38473037 Glycine max
Glyma.10G149400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 38468764-38469763 Glycine max
Glyma.10G149400 2.0kb upstream 2.0kb upstream 5274 true Chr10: 38469764-38475037 Glycine max
Glyma.10G149400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 38473038-38475037 Glycine max
Glyma.10G149400 2.0kb downstream 2.0kb downstream 5274 true Chr10: 38467764-38473037 Glycine max
Glyma.10G149400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 38467764-38469763 Glycine max
Glyma.10G149400 5.0kb upstream 5.0kb upstream 8274 true Chr10: 38469764-38478037 Glycine max
Glyma.10G149400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 38473038-38478037 Glycine max
Glyma.10G149400 5.0kb downstream 5.0kb downstream 8274 true Chr10: 38464764-38473037 Glycine max
Glyma.10G149400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 38464764-38469763 Glycine max
Glyma.10G149400 10.0kb upstream 10.0kb upstream 13274 true Chr10: 38469764-38483037 Glycine max
Glyma.10G149400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 38473038-38483037 Glycine max
Glyma.10G149400 10.0kb downstream 10.0kb downstream 13274 true Chr10: 38459764-38473037 Glycine max
Glyma.10G149400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 38459764-38469763 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242207 5265 Fabidae Singleton cluster - no MSA
123986939 5270 Rosid Singleton cluster - no MSA
123742446 5271 Pentapetalae View MSA
122794667 5272 Eudicot View MSA
122041615 5273 Angiosperm View MSA
121349825 5274 Embryophyte View MSA
123426689 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.66641 0.0 17.8488    
cufflinks 3.72781 0.0 10.3323   Low
cufflinks 7.64588 0.0 20.4072   High
cufflinks 4.20552 0.0 11.5108   Low
cufflinks 4.87937 0.0 13.2485    
cufflinks 5.79331 0.0 15.6008    
cufflinks 7.76661 0.0 20.7354   High
cufflinks 4.58964 0.0 12.5012    
cufflinks 5.6205 0.0 15.1566    
cufflinks 5.975       Low
cufflinks 17.801     High High
cufflinks 12.853     High  
cufflinks 8.955     High  
cufflinks 8.021     High Low
cufflinks 13.694     High  
cufflinks 9.829     High  
cufflinks 15.458     High  
cufflinks 11.61     High  
cufflinks 6.86       Low
cufflinks 10.909     High  
cufflinks 15.062     High  
cufflinks 11.573     High  
cufflinks 9.704     High  
cufflinks 15.836     High High
cufflinks 9.718     High  
cufflinks 16.614     High High

0 Strain