Gene : Glyma.11G179500 G. max Wm82.a2.v1
Defline:  (1 of 87) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1795
Name:  ? Glyma.11G179500 Secondary Identifier:  ? PAC:30528118
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G179500 0.5kb upstream 0.5kb upstream 1994 true Chr11: 24505709-24507702 Glycine max
Glyma.11G179500 0.5kb upstream 0.5kb upstream 500 false Chr11: 24505709-24506208 Glycine max
Glyma.11G179500 0.5kb downstream 0.5kb downstream 1994 true Chr11: 24506209-24508202 Glycine max
Glyma.11G179500 0.5kb downstream 0.5kb downstream 500 false Chr11: 24507703-24508202 Glycine max
Glyma.11G179500 1.0kb upstream 1.0kb upstream 2494 true Chr11: 24505209-24507702 Glycine max
Glyma.11G179500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 24505209-24506208 Glycine max
Glyma.11G179500 1.0kb downstream 1.0kb downstream 2494 true Chr11: 24506209-24508702 Glycine max
Glyma.11G179500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 24507703-24508702 Glycine max
Glyma.11G179500 2.0kb upstream 2.0kb upstream 3494 true Chr11: 24504209-24507702 Glycine max
Glyma.11G179500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 24504209-24506208 Glycine max
Glyma.11G179500 2.0kb downstream 2.0kb downstream 3494 true Chr11: 24506209-24509702 Glycine max
Glyma.11G179500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 24507703-24509702 Glycine max
Glyma.11G179500 5.0kb upstream 5.0kb upstream 6494 true Chr11: 24501209-24507702 Glycine max
Glyma.11G179500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 24501209-24506208 Glycine max
Glyma.11G179500 5.0kb downstream 5.0kb downstream 6494 true Chr11: 24506209-24512702 Glycine max
Glyma.11G179500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 24507703-24512702 Glycine max
Glyma.11G179500 10.0kb upstream 10.0kb upstream 11494 true Chr11: 24496209-24507702 Glycine max
Glyma.11G179500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 24496209-24506208 Glycine max
Glyma.11G179500 10.0kb downstream 10.0kb downstream 11494 true Chr11: 24506209-24517702 Glycine max
Glyma.11G179500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 24507703-24517702 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309396 5265 Fabidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain