Gene : Glyma.12G071900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11685:SF107 - C3H4 TYPE ZINC FINGER PROTEIN-RELATED Genomic Order:  719
Name:  ? Glyma.12G071900 Secondary Identifier:  ? PAC:30546243
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G071900 0.5kb upstream 0.5kb upstream 4472 true Chr12: 5268146-5272617 Glycine max
Glyma.12G071900 0.5kb upstream 0.5kb upstream 500 false Chr12: 5272118-5272617 Glycine max
Glyma.12G071900 0.5kb downstream 0.5kb downstream 4472 true Chr12: 5267646-5272117 Glycine max
Glyma.12G071900 0.5kb downstream 0.5kb downstream 500 false Chr12: 5267646-5268145 Glycine max
Glyma.12G071900 1.0kb upstream 1.0kb upstream 4972 true Chr12: 5268146-5273117 Glycine max
Glyma.12G071900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 5272118-5273117 Glycine max
Glyma.12G071900 1.0kb downstream 1.0kb downstream 4972 true Chr12: 5267146-5272117 Glycine max
Glyma.12G071900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 5267146-5268145 Glycine max
Glyma.12G071900 2.0kb upstream 2.0kb upstream 5972 true Chr12: 5268146-5274117 Glycine max
Glyma.12G071900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 5272118-5274117 Glycine max
Glyma.12G071900 2.0kb downstream 2.0kb downstream 5972 true Chr12: 5266146-5272117 Glycine max
Glyma.12G071900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 5266146-5268145 Glycine max
Glyma.12G071900 5.0kb upstream 5.0kb upstream 8972 true Chr12: 5268146-5277117 Glycine max
Glyma.12G071900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 5272118-5277117 Glycine max
Glyma.12G071900 5.0kb downstream 5.0kb downstream 8972 true Chr12: 5263146-5272117 Glycine max
Glyma.12G071900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 5263146-5268145 Glycine max
Glyma.12G071900 10.0kb upstream 10.0kb upstream 13972 true Chr12: 5268146-5282117 Glycine max
Glyma.12G071900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 5272118-5282117 Glycine max
Glyma.12G071900 10.0kb downstream 10.0kb downstream 13972 true Chr12: 5258146-5272117 Glycine max
Glyma.12G071900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 5258146-5268145 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309368 5265 Fabidae View MSA
124068077 5270 Rosid View MSA
123752192 5271 Pentapetalae View MSA
122796967 5272 Eudicot View MSA
122046828 5273 Angiosperm View MSA
123429065 5275 Viridiplantae View MSA
121348618 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0722631 0.0 0.28762 Low Low
cufflinks 0.224671 0.0 0.855458 Low  
cufflinks 0.126737 0.0 0.494639 Low  
cufflinks 0.125749 0.0 0.490867 Low  
cufflinks 0.139167 0.0 0.540426 Low  
cufflinks 0.0769889 0.0 0.305763 Low Low
cufflinks 0.308022 0.0 1.15579   High
cufflinks 0.0940391 0.0 0.370926 Low  
cufflinks 0.300716 0.0 1.1296   High
cufflinks 0.067     Low Low
cufflinks 0.063       Low
cufflinks 0.135        
cufflinks 0.153        
cufflinks 0.324       High
cufflinks 0.104        
cufflinks 0.16        
cufflinks 0.085       Low
cufflinks 0.16        
cufflinks 0.44       High
cufflinks 0.121        
cufflinks 0.146        
cufflinks 0.129        
cufflinks 0.139        
cufflinks 0.125        
cufflinks 0.145        
cufflinks 0.143        

0 Strain