Gene : Glyma.12G112000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12313//PTHR12313:SF5 - RNF5 Genomic Order:  1120
Name:  ? Glyma.12G112000 Secondary Identifier:  ? PAC:30546848
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G112000 0.5kb upstream 0.5kb upstream 3871 true Chr12: 10904580-10908450 Glycine max
Glyma.12G112000 0.5kb upstream 0.5kb upstream 500 false Chr12: 10907951-10908450 Glycine max
Glyma.12G112000 0.5kb downstream 0.5kb downstream 3871 true Chr12: 10904080-10907950 Glycine max
Glyma.12G112000 0.5kb downstream 0.5kb downstream 500 false Chr12: 10904080-10904579 Glycine max
Glyma.12G112000 1.0kb upstream 1.0kb upstream 4371 true Chr12: 10904580-10908950 Glycine max
Glyma.12G112000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 10907951-10908950 Glycine max
Glyma.12G112000 1.0kb downstream 1.0kb downstream 4371 true Chr12: 10903580-10907950 Glycine max
Glyma.12G112000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 10903580-10904579 Glycine max
Glyma.12G112000 2.0kb upstream 2.0kb upstream 5371 true Chr12: 10904580-10909950 Glycine max
Glyma.12G112000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 10907951-10909950 Glycine max
Glyma.12G112000 2.0kb downstream 2.0kb downstream 5371 true Chr12: 10902580-10907950 Glycine max
Glyma.12G112000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 10902580-10904579 Glycine max
Glyma.12G112000 5.0kb upstream 5.0kb upstream 8371 true Chr12: 10904580-10912950 Glycine max
Glyma.12G112000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 10907951-10912950 Glycine max
Glyma.12G112000 5.0kb downstream 5.0kb downstream 8371 true Chr12: 10899580-10907950 Glycine max
Glyma.12G112000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 10899580-10904579 Glycine max
Glyma.12G112000 10.0kb upstream 10.0kb upstream 13371 true Chr12: 10904580-10917950 Glycine max
Glyma.12G112000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 10907951-10917950 Glycine max
Glyma.12G112000 10.0kb downstream 10.0kb downstream 13371 true Chr12: 10894580-10907950 Glycine max
Glyma.12G112000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 10894580-10904579 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308246 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.5036 0.0 141.566 High High
cufflinks 9.08442 0.0 32.3554    
cufflinks 26.7343 0.0 80.1406 High  
cufflinks 18.4076 0.0 56.9577    
cufflinks 11.7646 0.0 39.3984    
cufflinks 9.39904 0.0 33.6654    
cufflinks 3.36762 0.0 12.3702   Low
cufflinks 2.22018 0.0 9.37372   Low
cufflinks 21.0455 0.0 64.9275 High  
cufflinks 0.677       Low
cufflinks 67.75     High High
cufflinks 9.918     High  
cufflinks 4.517        
cufflinks 5.245        
cufflinks 73.345     High High
cufflinks 32.932     High  
cufflinks 2.23       Low
cufflinks 3.706        
cufflinks 4.567        
cufflinks 53.182     High  
cufflinks 63.69     High High
cufflinks 18.99     High  
cufflinks 3.394        
cufflinks 46.632     High  
cufflinks 54.005     High  
cufflinks 35.193     High  

0 Strain