Gene : Glyma.12G162000 G. max Wm82.a2.v1
Defline:  (1 of 5) PF00098//PF14223 - Zinc knuckle (zf-CCHC) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1620
Name:  ? Glyma.12G162000 Secondary Identifier:  ? PAC:30546539
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G162000 0.5kb upstream 0.5kb upstream 2195 true Chr12: 30590641-30592835 Glycine max
Glyma.12G162000 0.5kb upstream 0.5kb upstream 500 false Chr12: 30590641-30591140 Glycine max
Glyma.12G162000 0.5kb downstream 0.5kb downstream 2195 true Chr12: 30591141-30593335 Glycine max
Glyma.12G162000 0.5kb downstream 0.5kb downstream 500 false Chr12: 30592836-30593335 Glycine max
Glyma.12G162000 1.0kb upstream 1.0kb upstream 2695 true Chr12: 30590141-30592835 Glycine max
Glyma.12G162000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 30590141-30591140 Glycine max
Glyma.12G162000 1.0kb downstream 1.0kb downstream 2695 true Chr12: 30591141-30593835 Glycine max
Glyma.12G162000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 30592836-30593835 Glycine max
Glyma.12G162000 2.0kb upstream 2.0kb upstream 3695 true Chr12: 30589141-30592835 Glycine max
Glyma.12G162000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 30589141-30591140 Glycine max
Glyma.12G162000 2.0kb downstream 2.0kb downstream 3695 true Chr12: 30591141-30594835 Glycine max
Glyma.12G162000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 30592836-30594835 Glycine max
Glyma.12G162000 5.0kb upstream 5.0kb upstream 6695 true Chr12: 30586141-30592835 Glycine max
Glyma.12G162000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 30586141-30591140 Glycine max
Glyma.12G162000 5.0kb downstream 5.0kb downstream 6695 true Chr12: 30591141-30597835 Glycine max
Glyma.12G162000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 30592836-30597835 Glycine max
Glyma.12G162000 10.0kb upstream 10.0kb upstream 11695 true Chr12: 30581141-30592835 Glycine max
Glyma.12G162000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 30581141-30591140 Glycine max
Glyma.12G162000 10.0kb downstream 10.0kb downstream 11695 true Chr12: 30591141-30602835 Glycine max
Glyma.12G162000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 30592836-30602835 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309396 5265 Fabidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain