Gene : Glyma.12G203900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12313//PTHR12313:SF5 - RNF5 Genomic Order:  2039
Name:  ? Glyma.12G203900 Secondary Identifier:  ? PAC:30547883
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G203900 0.5kb upstream 0.5kb upstream 3325 true Chr12: 36423706-36427030 Glycine max
Glyma.12G203900 0.5kb upstream 0.5kb upstream 500 false Chr12: 36426531-36427030 Glycine max
Glyma.12G203900 0.5kb downstream 0.5kb downstream 3325 true Chr12: 36423206-36426530 Glycine max
Glyma.12G203900 0.5kb downstream 0.5kb downstream 500 false Chr12: 36423206-36423705 Glycine max
Glyma.12G203900 1.0kb upstream 1.0kb upstream 3825 true Chr12: 36423706-36427530 Glycine max
Glyma.12G203900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 36426531-36427530 Glycine max
Glyma.12G203900 1.0kb downstream 1.0kb downstream 3825 true Chr12: 36422706-36426530 Glycine max
Glyma.12G203900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 36422706-36423705 Glycine max
Glyma.12G203900 2.0kb upstream 2.0kb upstream 4825 true Chr12: 36423706-36428530 Glycine max
Glyma.12G203900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 36426531-36428530 Glycine max
Glyma.12G203900 2.0kb downstream 2.0kb downstream 4825 true Chr12: 36421706-36426530 Glycine max
Glyma.12G203900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 36421706-36423705 Glycine max
Glyma.12G203900 5.0kb upstream 5.0kb upstream 7825 true Chr12: 36423706-36431530 Glycine max
Glyma.12G203900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 36426531-36431530 Glycine max
Glyma.12G203900 5.0kb downstream 5.0kb downstream 7825 true Chr12: 36418706-36426530 Glycine max
Glyma.12G203900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 36418706-36423705 Glycine max
Glyma.12G203900 10.0kb upstream 10.0kb upstream 12825 true Chr12: 36423706-36436530 Glycine max
Glyma.12G203900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 36426531-36436530 Glycine max
Glyma.12G203900 10.0kb downstream 10.0kb downstream 12825 true Chr12: 36413706-36426530 Glycine max
Glyma.12G203900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 36413706-36423705 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308246 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.70146 0.0 33.3888    
cufflinks 2.79058 0.0 14.1555   Low
cufflinks 7.94332 0.0 40.8262    
cufflinks 7.31335 0.0 31.6393    
cufflinks 4.77078 0.0 20.0367    
cufflinks 15.7977 0.0 72.6789   High
cufflinks 17.3589 0.0 75.7033   High
cufflinks 8.2948 0.0 38.4179    
cufflinks 7.13879 0.0 38.354    
cufflinks 0.32        
cufflinks 1.489       High
cufflinks 0.865        
cufflinks 0.868        
cufflinks 0.356        
cufflinks 1.166        
cufflinks 0.235       Low
cufflinks 1.053        
cufflinks 0.442        
cufflinks 0.419        
cufflinks 0.302        
cufflinks 1.389       High
cufflinks 0.402        
cufflinks 0.264       Low
cufflinks 1.668       High
cufflinks 0.312        
cufflinks 1.773       High

0 Strain