Gene : Glyma.12G241600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12217 - LIGATIN Genomic Order:  2416
Name:  ? Glyma.12G241600 Secondary Identifier:  ? PAC:30545820
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G241600 0.5kb upstream 0.5kb upstream 6939 true Chr12: 39989461-39996399 Glycine max
Glyma.12G241600 0.5kb upstream 0.5kb upstream 500 false Chr12: 39995900-39996399 Glycine max
Glyma.12G241600 0.5kb downstream 0.5kb downstream 6939 true Chr12: 39988961-39995899 Glycine max
Glyma.12G241600 0.5kb downstream 0.5kb downstream 500 false Chr12: 39988961-39989460 Glycine max
Glyma.12G241600 1.0kb upstream 1.0kb upstream 7439 true Chr12: 39989461-39996899 Glycine max
Glyma.12G241600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39995900-39996899 Glycine max
Glyma.12G241600 1.0kb downstream 1.0kb downstream 7439 true Chr12: 39988461-39995899 Glycine max
Glyma.12G241600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39988461-39989460 Glycine max
Glyma.12G241600 2.0kb upstream 2.0kb upstream 8439 true Chr12: 39989461-39997899 Glycine max
Glyma.12G241600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39995900-39997899 Glycine max
Glyma.12G241600 2.0kb downstream 2.0kb downstream 8439 true Chr12: 39987461-39995899 Glycine max
Glyma.12G241600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39987461-39989460 Glycine max
Glyma.12G241600 5.0kb upstream 5.0kb upstream 11439 true Chr12: 39989461-40000899 Glycine max
Glyma.12G241600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39995900-40000899 Glycine max
Glyma.12G241600 5.0kb downstream 5.0kb downstream 11439 true Chr12: 39984461-39995899 Glycine max
Glyma.12G241600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39984461-39989460 Glycine max
Glyma.12G241600 10.0kb upstream 10.0kb upstream 16439 true Chr12: 39989461-40005899 Glycine max
Glyma.12G241600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39995900-40005899 Glycine max
Glyma.12G241600 10.0kb downstream 10.0kb downstream 16439 true Chr12: 39979461-39995899 Glycine max
Glyma.12G241600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39979461-39989460 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041515 5273 Angiosperm View MSA
122305235 5265 Fabidae View MSA
124063862 5270 Rosid View MSA
123737904 5271 Pentapetalae View MSA
122786176 5272 Eudicot View MSA
121347053 5274 Embryophyte View MSA
123424674 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.6792 0.0 15.1875   Low
cufflinks 5.41369 0.0 20.286    
cufflinks 3.87021 0.0 13.4409   Low
cufflinks 6.12386 0.0 22.2226    
cufflinks 5.4461 0.0 20.2403    
cufflinks 3.48732 0.0 14.6926   Low
cufflinks 6.45087 0.0 20.2172    
cufflinks 6.56606 0.0 20.4799   High
cufflinks 5.80362 0.0 21.3499    
cufflinks 0.963        
cufflinks 0.424       Low
cufflinks 1.246       High
cufflinks 1.117        
cufflinks 1.448       High
cufflinks 0.461       Low
cufflinks 0.745        
cufflinks 0.543        
cufflinks 1.272       High
cufflinks 1.271       High
cufflinks 0.604        
cufflinks 0.434       Low
cufflinks 0.717        
cufflinks 0.862        
cufflinks 0.565        
cufflinks 0.634        
cufflinks 0.74        

0 Strain