Gene : Glyma.13G144000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Genomic Order:  1440
Name:  ? Glyma.13G144000 Secondary Identifier:  ? PAC:30500746
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G144000 0.5kb upstream 0.5kb upstream 5937 true Chr13: 25666421-25672357 Glycine max
Glyma.13G144000 0.5kb upstream 0.5kb upstream 500 false Chr13: 25671858-25672357 Glycine max
Glyma.13G144000 0.5kb downstream 0.5kb downstream 5937 true Chr13: 25665921-25671857 Glycine max
Glyma.13G144000 0.5kb downstream 0.5kb downstream 500 false Chr13: 25665921-25666420 Glycine max
Glyma.13G144000 1.0kb upstream 1.0kb upstream 6437 true Chr13: 25666421-25672857 Glycine max
Glyma.13G144000 1.0kb upstream 1.0kb upstream 1000 false Chr13: 25671858-25672857 Glycine max
Glyma.13G144000 1.0kb downstream 1.0kb downstream 6437 true Chr13: 25665421-25671857 Glycine max
Glyma.13G144000 1.0kb downstream 1.0kb downstream 1000 false Chr13: 25665421-25666420 Glycine max
Glyma.13G144000 2.0kb upstream 2.0kb upstream 7437 true Chr13: 25666421-25673857 Glycine max
Glyma.13G144000 2.0kb upstream 2.0kb upstream 2000 false Chr13: 25671858-25673857 Glycine max
Glyma.13G144000 2.0kb downstream 2.0kb downstream 7437 true Chr13: 25664421-25671857 Glycine max
Glyma.13G144000 2.0kb downstream 2.0kb downstream 2000 false Chr13: 25664421-25666420 Glycine max
Glyma.13G144000 5.0kb upstream 5.0kb upstream 10437 true Chr13: 25666421-25676857 Glycine max
Glyma.13G144000 5.0kb upstream 5.0kb upstream 5000 false Chr13: 25671858-25676857 Glycine max
Glyma.13G144000 5.0kb downstream 5.0kb downstream 10437 true Chr13: 25661421-25671857 Glycine max
Glyma.13G144000 5.0kb downstream 5.0kb downstream 5000 false Chr13: 25661421-25666420 Glycine max
Glyma.13G144000 10.0kb upstream 10.0kb upstream 15437 true Chr13: 25666421-25681857 Glycine max
Glyma.13G144000 10.0kb upstream 10.0kb upstream 10000 false Chr13: 25671858-25681857 Glycine max
Glyma.13G144000 10.0kb downstream 10.0kb downstream 15437 true Chr13: 25656421-25671857 Glycine max
Glyma.13G144000 10.0kb downstream 10.0kb downstream 10000 false Chr13: 25656421-25666420 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311038 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.5024 0.0 60.9533 High High
cufflinks 8.38643 0.0 22.5943    
cufflinks 7.6455 0.0 20.6577    
cufflinks 4.23772 0.0 12.0259    
cufflinks 2.74907 0.0 8.27847    
cufflinks 1.67116 0.0 5.39495   Low
cufflinks 3.40226 0.0 9.97173    
cufflinks 3.55901 0.0 10.3105    
cufflinks 2.19061 0.0 6.79591    
cufflinks 2.759        
cufflinks 0.757        
cufflinks 4.857        
cufflinks 0.993        
cufflinks 1.024        
cufflinks 0.667        
cufflinks 18.412     High High
cufflinks 0.522       Low
cufflinks 4.388        
cufflinks 4.167        
cufflinks 25.208     High High
cufflinks 0.556       Low
cufflinks 22.269     High High
cufflinks 19.496     High High
cufflinks 0.799        
cufflinks 21.299     High High
cufflinks 0.309       Low

0 Strain