Gene : Glyma.13G135100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22763:SF20 - E3 LIGASE SHOOT GRAVITROPISM 9 Genomic Order:  1351
Name:  ? Glyma.13G135100 Secondary Identifier:  ? PAC:30502979
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G135100 0.5kb upstream 0.5kb upstream 2198 true Chr13: 24744240-24746437 Glycine max
Glyma.13G135100 0.5kb upstream 0.5kb upstream 500 false Chr13: 24744240-24744739 Glycine max
Glyma.13G135100 0.5kb downstream 0.5kb downstream 2198 true Chr13: 24744740-24746937 Glycine max
Glyma.13G135100 0.5kb downstream 0.5kb downstream 500 false Chr13: 24746438-24746937 Glycine max
Glyma.13G135100 1.0kb upstream 1.0kb upstream 2698 true Chr13: 24743740-24746437 Glycine max
Glyma.13G135100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 24743740-24744739 Glycine max
Glyma.13G135100 1.0kb downstream 1.0kb downstream 2698 true Chr13: 24744740-24747437 Glycine max
Glyma.13G135100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 24746438-24747437 Glycine max
Glyma.13G135100 2.0kb upstream 2.0kb upstream 3698 true Chr13: 24742740-24746437 Glycine max
Glyma.13G135100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 24742740-24744739 Glycine max
Glyma.13G135100 2.0kb downstream 2.0kb downstream 3698 true Chr13: 24744740-24748437 Glycine max
Glyma.13G135100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 24746438-24748437 Glycine max
Glyma.13G135100 5.0kb upstream 5.0kb upstream 6698 true Chr13: 24739740-24746437 Glycine max
Glyma.13G135100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 24739740-24744739 Glycine max
Glyma.13G135100 5.0kb downstream 5.0kb downstream 6698 true Chr13: 24744740-24751437 Glycine max
Glyma.13G135100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 24746438-24751437 Glycine max
Glyma.13G135100 10.0kb upstream 10.0kb upstream 11698 true Chr13: 24734740-24746437 Glycine max
Glyma.13G135100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 24734740-24744739 Glycine max
Glyma.13G135100 10.0kb downstream 10.0kb downstream 11698 true Chr13: 24744740-24756437 Glycine max
Glyma.13G135100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 24746438-24756437 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312166 5265 Fabidae View MSA
124063596 5270 Rosid View MSA
123746607 5271 Pentapetalae View MSA
122791525 5272 Eudicot View MSA
122041904 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121309901 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.76312 0.0 24.4118   High
cufflinks 0.771636 0.0 2.81801    
cufflinks 0.7577 0.0 2.77264    
cufflinks 3.76093 0.0 11.648    
cufflinks 0.999038 0.0 3.57739    
cufflinks 0.27909 0.0 1.06913 Low Low
cufflinks 0.903847 0.0 3.25867    
cufflinks 4.98818 0.0 14.8605   High
cufflinks 0.711039 0.0 2.60444    
cufflinks 2.682       High
cufflinks 0.254       Low
cufflinks 0.65        
cufflinks 0.678        
cufflinks 0.735        
cufflinks 0.167       Low
cufflinks 1.068        
cufflinks 0.885        
cufflinks 1.644       High
cufflinks 0.234       Low
cufflinks 1.062        
cufflinks 0.277       Low
cufflinks 1.112        
cufflinks 1.488        
cufflinks 0.338        
cufflinks 1.431        
cufflinks 0.403        

0 Strain