Gene : Glyma.13G297700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12313//PTHR12313:SF5 - RNF5 Genomic Order:  2977
Name:  ? Glyma.13G297700 Secondary Identifier:  ? PAC:30505805
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G297700 0.5kb upstream 0.5kb upstream 2872 true Chr13: 39643240-39646111 Glycine max
Glyma.13G297700 0.5kb upstream 0.5kb upstream 500 false Chr13: 39643240-39643739 Glycine max
Glyma.13G297700 0.5kb downstream 0.5kb downstream 2872 true Chr13: 39643740-39646611 Glycine max
Glyma.13G297700 0.5kb downstream 0.5kb downstream 500 false Chr13: 39646112-39646611 Glycine max
Glyma.13G297700 1.0kb upstream 1.0kb upstream 3372 true Chr13: 39642740-39646111 Glycine max
Glyma.13G297700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 39642740-39643739 Glycine max
Glyma.13G297700 1.0kb downstream 1.0kb downstream 3372 true Chr13: 39643740-39647111 Glycine max
Glyma.13G297700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 39646112-39647111 Glycine max
Glyma.13G297700 2.0kb upstream 2.0kb upstream 4372 true Chr13: 39641740-39646111 Glycine max
Glyma.13G297700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 39641740-39643739 Glycine max
Glyma.13G297700 2.0kb downstream 2.0kb downstream 4372 true Chr13: 39643740-39648111 Glycine max
Glyma.13G297700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 39646112-39648111 Glycine max
Glyma.13G297700 5.0kb upstream 5.0kb upstream 7372 true Chr13: 39638740-39646111 Glycine max
Glyma.13G297700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 39638740-39643739 Glycine max
Glyma.13G297700 5.0kb downstream 5.0kb downstream 7372 true Chr13: 39643740-39651111 Glycine max
Glyma.13G297700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 39646112-39651111 Glycine max
Glyma.13G297700 10.0kb upstream 10.0kb upstream 12372 true Chr13: 39633740-39646111 Glycine max
Glyma.13G297700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 39633740-39643739 Glycine max
Glyma.13G297700 10.0kb downstream 10.0kb downstream 12372 true Chr13: 39643740-39656111 Glycine max
Glyma.13G297700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 39646112-39656111 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308246 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.71187 0.0 30.3167    
cufflinks 2.03515 0.0 8.15491   Low
cufflinks 26.4791 0.0 92.6511 High High
cufflinks 9.11007 0.0 37.981    
cufflinks 12.0838 0.0 45.7129    
cufflinks 27.6427 0.0 96.8532 High High
cufflinks 8.56126 0.0 35.9898    
cufflinks 8.96834 0.0 36.7912    
cufflinks 14.6468 0.0 53.9144    
cufflinks 2.61        
cufflinks 30.48     High High
cufflinks 5.621        
cufflinks 4.467        
cufflinks 1.705        
cufflinks 30.429     High High
cufflinks 1.251        
cufflinks 25.769     High High
cufflinks 1.946        
cufflinks 0.841       Low
cufflinks 1.002       Low
cufflinks 32.465     High High
cufflinks 1.106        
cufflinks 1.036        
cufflinks 21.237     High  
cufflinks 0.978       Low
cufflinks 47.809     High High

0 Strain