Gene : Glyma.13G332400 G. max Wm82.a2.v1
Defline:  (1 of 24) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  3324
Name:  ? Glyma.13G332400 Secondary Identifier:  ? PAC:30504606
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G332400 0.5kb upstream 0.5kb upstream 3320 true Chr13: 42674401-42677720 Glycine max
Glyma.13G332400 0.5kb upstream 0.5kb upstream 500 false Chr13: 42677221-42677720 Glycine max
Glyma.13G332400 0.5kb downstream 0.5kb downstream 3320 true Chr13: 42673901-42677220 Glycine max
Glyma.13G332400 0.5kb downstream 0.5kb downstream 500 false Chr13: 42673901-42674400 Glycine max
Glyma.13G332400 1.0kb upstream 1.0kb upstream 3820 true Chr13: 42674401-42678220 Glycine max
Glyma.13G332400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 42677221-42678220 Glycine max
Glyma.13G332400 1.0kb downstream 1.0kb downstream 3820 true Chr13: 42673401-42677220 Glycine max
Glyma.13G332400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 42673401-42674400 Glycine max
Glyma.13G332400 2.0kb upstream 2.0kb upstream 4820 true Chr13: 42674401-42679220 Glycine max
Glyma.13G332400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 42677221-42679220 Glycine max
Glyma.13G332400 2.0kb downstream 2.0kb downstream 4820 true Chr13: 42672401-42677220 Glycine max
Glyma.13G332400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 42672401-42674400 Glycine max
Glyma.13G332400 5.0kb upstream 5.0kb upstream 7820 true Chr13: 42674401-42682220 Glycine max
Glyma.13G332400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 42677221-42682220 Glycine max
Glyma.13G332400 5.0kb downstream 5.0kb downstream 7820 true Chr13: 42669401-42677220 Glycine max
Glyma.13G332400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 42669401-42674400 Glycine max
Glyma.13G332400 10.0kb upstream 10.0kb upstream 12820 true Chr13: 42674401-42687220 Glycine max
Glyma.13G332400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 42677221-42687220 Glycine max
Glyma.13G332400 10.0kb downstream 10.0kb downstream 12820 true Chr13: 42664401-42677220 Glycine max
Glyma.13G332400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 42664401-42674400 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302504 5265 Fabidae View MSA
124072363 5270 Rosid View MSA
123740411 5271 Pentapetalae View MSA
122793387 5272 Eudicot View MSA
122048876 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.92788 0.0 8.16167   High
cufflinks 1.28562 0.0 6.59267    
cufflinks 0.53677 0.0 3.05931   Low
cufflinks 0.82531 0.0 3.33006    
cufflinks 1.03951 0.0 5.45471    
cufflinks 0.637294 0.0 2.78436   Low
cufflinks 0.922084 0.0 3.59766    
cufflinks 0.770296 0.0 4.44023    
cufflinks 1.05698 0.0 3.93294    
cufflinks 0.393        
cufflinks 0.229       Low
cufflinks 0.568        
cufflinks 0.989       High
cufflinks 1.151       High
cufflinks 0.381        
cufflinks 0.575        
cufflinks 0.37        
cufflinks 0.592        
cufflinks 0.632        
cufflinks 0.545        
cufflinks 0.189       Low
cufflinks 0.619        
cufflinks 0.755        
cufflinks 0.245       Low
cufflinks 0.622        
cufflinks 0.28       Low

0 Strain