Gene : Glyma.16G017400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12802:SF43 - PROTEIN CCA1-RELATED Genomic Order:  174
Name:  ? Glyma.16G017400 Secondary Identifier:  ? PAC:30562091
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G017400 0.5kb upstream 0.5kb upstream 13964 true Chr16: 1526133-1540096 Glycine max
Glyma.16G017400 0.5kb upstream 0.5kb upstream 500 false Chr16: 1539597-1540096 Glycine max
Glyma.16G017400 0.5kb downstream 0.5kb downstream 13964 true Chr16: 1525633-1539596 Glycine max
Glyma.16G017400 0.5kb downstream 0.5kb downstream 500 false Chr16: 1525633-1526132 Glycine max
Glyma.16G017400 1.0kb upstream 1.0kb upstream 14464 true Chr16: 1526133-1540596 Glycine max
Glyma.16G017400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1539597-1540596 Glycine max
Glyma.16G017400 1.0kb downstream 1.0kb downstream 14464 true Chr16: 1525133-1539596 Glycine max
Glyma.16G017400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1525133-1526132 Glycine max
Glyma.16G017400 2.0kb upstream 2.0kb upstream 15464 true Chr16: 1526133-1541596 Glycine max
Glyma.16G017400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1539597-1541596 Glycine max
Glyma.16G017400 2.0kb downstream 2.0kb downstream 15464 true Chr16: 1524133-1539596 Glycine max
Glyma.16G017400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1524133-1526132 Glycine max
Glyma.16G017400 5.0kb upstream 5.0kb upstream 18464 true Chr16: 1526133-1544596 Glycine max
Glyma.16G017400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1539597-1544596 Glycine max
Glyma.16G017400 5.0kb downstream 5.0kb downstream 18464 true Chr16: 1521133-1539596 Glycine max
Glyma.16G017400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1521133-1526132 Glycine max
Glyma.16G017400 10.0kb upstream 10.0kb upstream 23464 true Chr16: 1526133-1549596 Glycine max
Glyma.16G017400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1539597-1549596 Glycine max
Glyma.16G017400 10.0kb downstream 10.0kb downstream 23464 true Chr16: 1516133-1539596 Glycine max
Glyma.16G017400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1516133-1526132 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311594 5265 Fabidae View MSA
124066959 5270 Rosid View MSA
123746755 5271 Pentapetalae View MSA
122793236 5272 Eudicot View MSA
122048982 5273 Angiosperm View MSA
121350117 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 169.619 0.0 2247.41 High High
cufflinks 41.2262 0.0 239.064 High  
cufflinks 48.4748 0.0 302.944 High  
cufflinks 30.0195 0.0 158.813 High  
cufflinks 17.983 0.0 83.8179    
cufflinks 33.2195 0.0 180.81 High  
cufflinks 11.0126 0.0 49.7982   Low
cufflinks 43.9334 0.0 260.436 High  
cufflinks 14.083 0.0 59.2255   Low
cufflinks 4.475        
cufflinks 0.934       Low
cufflinks 1.244        
cufflinks 1.97        
cufflinks 1.225        
cufflinks 1.113       Low
cufflinks 9.474     High High
cufflinks 1.155       Low
cufflinks 1.598        
cufflinks 5.035        
cufflinks 5.132        
cufflinks 1.652        
cufflinks 7.729     High High
cufflinks 6.78       High
cufflinks 1.701        
cufflinks 9.338     High High
cufflinks 3.513        

0 Strain