Gene : Glyma.16G042600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 Genomic Order:  426
Name:  ? Glyma.16G042600 Secondary Identifier:  ? PAC:30561127
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G042600 0.5kb upstream 0.5kb upstream 12320 true Chr16: 3964264-3976583 Glycine max
Glyma.16G042600 0.5kb upstream 0.5kb upstream 500 false Chr16: 3976084-3976583 Glycine max
Glyma.16G042600 0.5kb downstream 0.5kb downstream 12320 true Chr16: 3963764-3976083 Glycine max
Glyma.16G042600 0.5kb downstream 0.5kb downstream 500 false Chr16: 3963764-3964263 Glycine max
Glyma.16G042600 1.0kb upstream 1.0kb upstream 12820 true Chr16: 3964264-3977083 Glycine max
Glyma.16G042600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3976084-3977083 Glycine max
Glyma.16G042600 1.0kb downstream 1.0kb downstream 12820 true Chr16: 3963264-3976083 Glycine max
Glyma.16G042600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3963264-3964263 Glycine max
Glyma.16G042600 2.0kb upstream 2.0kb upstream 13820 true Chr16: 3964264-3978083 Glycine max
Glyma.16G042600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3976084-3978083 Glycine max
Glyma.16G042600 2.0kb downstream 2.0kb downstream 13820 true Chr16: 3962264-3976083 Glycine max
Glyma.16G042600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3962264-3964263 Glycine max
Glyma.16G042600 5.0kb upstream 5.0kb upstream 16820 true Chr16: 3964264-3981083 Glycine max
Glyma.16G042600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3976084-3981083 Glycine max
Glyma.16G042600 5.0kb downstream 5.0kb downstream 16820 true Chr16: 3959264-3976083 Glycine max
Glyma.16G042600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3959264-3964263 Glycine max
Glyma.16G042600 10.0kb upstream 10.0kb upstream 21820 true Chr16: 3964264-3986083 Glycine max
Glyma.16G042600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3976084-3986083 Glycine max
Glyma.16G042600 10.0kb downstream 10.0kb downstream 21820 true Chr16: 3954264-3976083 Glycine max
Glyma.16G042600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3954264-3964263 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301146 5265 Fabidae View MSA
124060805 5270 Rosid View MSA
123746198 5271 Pentapetalae View MSA
122787645 5272 Eudicot View MSA
122046852 5273 Angiosperm View MSA
121349524 5274 Embryophyte View MSA
123426579 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.23805 0.0 37.1537    
cufflinks 12.5209 0.0 48.6695    
cufflinks 6.7213 0.0 28.6498   Low
cufflinks 12.9363 0.0 50.2751    
cufflinks 14.3363 0.0 61.8778   High
cufflinks 11.3718 0.0 51.4911    
cufflinks 11.0451 0.0 50.0368    
cufflinks 9.29491 0.0 39.4139    
cufflinks 9.93244 0.0 38.3514    
cufflinks 0.667        
cufflinks 0.244       Low
cufflinks 0.599        
cufflinks 1.154       High
cufflinks 1.197       High
cufflinks 0.374        
cufflinks 0.721        
cufflinks 0.319       Low
cufflinks 1.026       High
cufflinks 0.977       High
cufflinks 0.625        
cufflinks 0.354        
cufflinks 0.634        
cufflinks 0.656        
cufflinks 0.261       Low
cufflinks 0.648        
cufflinks 0.462        

0 Strain