Protein Family : CCR4-NOT transcription factor, putative, expressed 123426579

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  96

96 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29950.t000034 (1 of 1) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) R. communis v0.1 9136   29950: 182416-191551
Cucsa.340590 (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 C. sativus v1.0 26622   scaffold03356: 2974305-3000926
orange1.1g002678m.g (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 C. sinensis v1.1 12804   scaffold00117: 378078-390881
AT5G18230 (1 of 1) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) A. thaliana TAIR10 5806   Chr5: 6021444-6027249
Thhalv10012672m.g (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 E. salsugineum v1.0 5596   scaffold_2: 6192334-6197929
Ciclev10018788m.g (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 C. clementina v1.0 12253   scaffold_3: 41254856-41267108
Lus10002632.g (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 L. usitatissimum v1.0 6002   scaffold2083: 82693-88694
Lus10020262.g (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 L. usitatissimum v1.0 6027   scaffold641: 124879-130905
Gorai.013G123000 (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 G. raimondii v2.1 9118   Chr13: 31606690-31615807
Gorai.007G287600 (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 G. raimondii v2.1 7842   Chr07: 49414363-49422204
Genemark1.7034_g (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 C. subellipsoidea C-169 v2.0 4108   scaffold_16: 1229040-1233147
EuGene.1500010231 (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 M. sp RCC299 v3.0 2459   Chr_15: 443490-445948
Thecc1EG026449 (1 of 1) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) T. cacao v1.1 8362   scaffold_5: 38311682-38320043
Migut.K00002 (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 M. guttatus v2.0 8174   scaffold_11: 42146-50319
Migut.N01517 (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 M. guttatus v2.0 8771   scaffold_14: 13476589-13485359
Araha.8689s0018 (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 A. halleri v1.1 5843   Scaffold8689: 50822-56664
Cagra.0906s0018 (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 C. grandiflora v1.1 6051   Scaffold906: 43912-49962
Glyma.16G042600 (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 G. max Wm82.a2.v1 11820   Chr16: 3964264-3976083
Glyma.16G152500 (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 G. max Wm82.a2.v1 13870   Chr16: 31305625-31319494
Glyma.02G071300 (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 G. max Wm82.a2.v1 11289   Chr02: 6258325-6269613
Glyma.19G109500 (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 G. max Wm82.a2.v1 19493   Chr19: 36312452-36331944
Brara.J01740 (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 B. rapa FPsc v1.3 5431   A10: 14565916-14571346
Bostr.29044s0121 (1 of 1) KOG2150 - CCR4-NOT transcriptional regulation complex, NOT5 subunit B. stricta v1.2 6819   Scaffold29044: 1484916-1491734
Bostr.26527s0385 (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 B. stricta v1.2 6152   Scaffold26527: 2221159-2227310
Cre04.g227350 (1 of 1) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) C. reinhardtii v5.6 CCR4 7222   chromosome_4: 3347699-3354920
Medtr7g085350 (1 of 1) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 M. truncatula Mt4.0v1 13086   chr7: 33041286-33054371
SapurV1A.1928s0010 (1 of 2) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) S. purpurea v1.0 11532   chr13: 5513859-5525390
SapurV1A.0308s0220 (1 of 2) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) S. purpurea v1.0 12934   chr19: 2191457-2204390
evm_27.TU.AmTr_v1.0_scaffold00004.76 (1 of 1) KOG2150 - CCR4-NOT transcriptional regulation complex, NOT5 subunit A. trichopoda v1.0 16396   AmTr_v1.0_scaffold00004: 1108308-1124703
evm_27.TU.AmTr_v1.0_scaffold00012.161 (1 of 2) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 A. trichopoda v1.0 11736   AmTr_v1.0_scaffold00012: 4352685-4364420

96 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29950.m001150 R. communis v0.1 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Cucsa.340590.1 C. sativus v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
orange1.1g002678m C. sinensis v1.1 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
AT5G18230.2 A. thaliana TAIR10 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Thhalv10012672m E. salsugineum v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Ciclev10018788m C. clementina v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Lus10002632 L. usitatissimum v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
Lus10020262 L. usitatissimum v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
Gorai.013G123000.1 G. raimondii v2.1 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
Gorai.007G287600.1 G. raimondii v2.1 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
58005 C. subellipsoidea C-169 v2.0 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
64510 M. sp RCC299 v3.0 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Thecc1EG026449t1 T. cacao v1.1 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Migut.K00002.1.p M. guttatus v2.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
Migut.N01517.1.p M. guttatus v2.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
Araha.8689s0018.1.p A. halleri v1.1 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Cagra.0906s0018.1.p C. grandiflora v1.1 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Glyma.16G042600.1.p G. max Wm82.a2.v1 123426579 CCR4-NOT transcription factor, putative, expressed 4 5275 Viridiplantae
Glyma.16G152500.1.p G. max Wm82.a2.v1 123426579 CCR4-NOT transcription factor, putative, expressed 4 5275 Viridiplantae
Glyma.02G071300.1.p G. max Wm82.a2.v1 123426579 CCR4-NOT transcription factor, putative, expressed 4 5275 Viridiplantae
Glyma.19G109500.1.p G. max Wm82.a2.v1 123426579 CCR4-NOT transcription factor, putative, expressed 4 5275 Viridiplantae
Brara.J01740.1.p B. rapa FPsc v1.3 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Bostr.29044s0121.1.p B. stricta v1.2 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
Bostr.26527s0385.1.p B. stricta v1.2 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
Cre04.g227350.t1.1 C. reinhardtii v5.6 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
Medtr7g085350.1 M. truncatula Mt4.0v1 123426579 CCR4-NOT transcription factor, putative, expressed 1 5275 Viridiplantae
SapurV1A.1928s0010.1.p S. purpurea v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
SapurV1A.0308s0220.1.p S. purpurea v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
evm_27.model.AmTr_v1.0_scaffold00004.76 A. trichopoda v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae
evm_27.model.AmTr_v1.0_scaffold00012.161 A. trichopoda v1.0 123426579 CCR4-NOT transcription factor, putative, expressed 2 5275 Viridiplantae