Gene : Glyma.16G152500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 Genomic Order:  1525
Name:  ? Glyma.16G152500 Secondary Identifier:  ? PAC:30561484
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G152500 0.5kb upstream 0.5kb upstream 14370 true Chr16: 31305125-31319494 Glycine max
Glyma.16G152500 0.5kb upstream 0.5kb upstream 500 false Chr16: 31305125-31305624 Glycine max
Glyma.16G152500 0.5kb downstream 0.5kb downstream 14370 true Chr16: 31305625-31319994 Glycine max
Glyma.16G152500 0.5kb downstream 0.5kb downstream 500 false Chr16: 31319495-31319994 Glycine max
Glyma.16G152500 1.0kb upstream 1.0kb upstream 14870 true Chr16: 31304625-31319494 Glycine max
Glyma.16G152500 1.0kb upstream 1.0kb upstream 1000 false Chr16: 31304625-31305624 Glycine max
Glyma.16G152500 1.0kb downstream 1.0kb downstream 14870 true Chr16: 31305625-31320494 Glycine max
Glyma.16G152500 1.0kb downstream 1.0kb downstream 1000 false Chr16: 31319495-31320494 Glycine max
Glyma.16G152500 2.0kb upstream 2.0kb upstream 15870 true Chr16: 31303625-31319494 Glycine max
Glyma.16G152500 2.0kb upstream 2.0kb upstream 2000 false Chr16: 31303625-31305624 Glycine max
Glyma.16G152500 2.0kb downstream 2.0kb downstream 15870 true Chr16: 31305625-31321494 Glycine max
Glyma.16G152500 2.0kb downstream 2.0kb downstream 2000 false Chr16: 31319495-31321494 Glycine max
Glyma.16G152500 5.0kb upstream 5.0kb upstream 18870 true Chr16: 31300625-31319494 Glycine max
Glyma.16G152500 5.0kb upstream 5.0kb upstream 5000 false Chr16: 31300625-31305624 Glycine max
Glyma.16G152500 5.0kb downstream 5.0kb downstream 18870 true Chr16: 31305625-31324494 Glycine max
Glyma.16G152500 5.0kb downstream 5.0kb downstream 5000 false Chr16: 31319495-31324494 Glycine max
Glyma.16G152500 10.0kb upstream 10.0kb upstream 23870 true Chr16: 31295625-31319494 Glycine max
Glyma.16G152500 10.0kb upstream 10.0kb upstream 10000 false Chr16: 31295625-31305624 Glycine max
Glyma.16G152500 10.0kb downstream 10.0kb downstream 23870 true Chr16: 31305625-31329494 Glycine max
Glyma.16G152500 10.0kb downstream 10.0kb downstream 10000 false Chr16: 31319495-31329494 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254229 5265 Fabidae View MSA
124060805 5270 Rosid View MSA
123746198 5271 Pentapetalae View MSA
122787645 5272 Eudicot View MSA
122046852 5273 Angiosperm View MSA
121349524 5274 Embryophyte View MSA
123426579 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.726 0.0 36.8819    
cufflinks 13.3688 0.0 35.8982    
cufflinks 12.4871 0.0 33.4884    
cufflinks 12.357 0.0 33.1013    
cufflinks 9.08921 0.0 24.2514   Low
cufflinks 19.2044 0.0 52.6181   High
cufflinks 9.32164 0.0 24.8705   Low
cufflinks 12.0053 0.0 32.1448    
cufflinks 13.1505 0.0 35.2925    
cufflinks 2.048        
cufflinks 1.722       Low
cufflinks 2.793        
cufflinks 2.221        
cufflinks 1.738       Low
cufflinks 2.198        
cufflinks 3.068        
cufflinks 1.334       Low
cufflinks 2.57        
cufflinks 3.229       High
cufflinks 3.354       High
cufflinks 2.21        
cufflinks 3.269       High
cufflinks 2.384        
cufflinks 2.719        
cufflinks 2.794        
cufflinks 1.886        

0 Strain