Gene : Glyma.19G109500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23326:SF1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 Genomic Order:  1095
Name:  ? Glyma.19G109500 Secondary Identifier:  ? PAC:30511312
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G109500 0.5kb upstream 0.5kb upstream 19993 true Chr19: 36311952-36331944 Glycine max
Glyma.19G109500 0.5kb upstream 0.5kb upstream 500 false Chr19: 36311952-36312451 Glycine max
Glyma.19G109500 0.5kb downstream 0.5kb downstream 19993 true Chr19: 36312452-36332444 Glycine max
Glyma.19G109500 0.5kb downstream 0.5kb downstream 500 false Chr19: 36331945-36332444 Glycine max
Glyma.19G109500 1.0kb upstream 1.0kb upstream 20493 true Chr19: 36311452-36331944 Glycine max
Glyma.19G109500 1.0kb upstream 1.0kb upstream 1000 false Chr19: 36311452-36312451 Glycine max
Glyma.19G109500 1.0kb downstream 1.0kb downstream 20493 true Chr19: 36312452-36332944 Glycine max
Glyma.19G109500 1.0kb downstream 1.0kb downstream 1000 false Chr19: 36331945-36332944 Glycine max
Glyma.19G109500 2.0kb upstream 2.0kb upstream 21493 true Chr19: 36310452-36331944 Glycine max
Glyma.19G109500 2.0kb upstream 2.0kb upstream 2000 false Chr19: 36310452-36312451 Glycine max
Glyma.19G109500 2.0kb downstream 2.0kb downstream 21493 true Chr19: 36312452-36333944 Glycine max
Glyma.19G109500 2.0kb downstream 2.0kb downstream 2000 false Chr19: 36331945-36333944 Glycine max
Glyma.19G109500 5.0kb upstream 5.0kb upstream 24493 true Chr19: 36307452-36331944 Glycine max
Glyma.19G109500 5.0kb upstream 5.0kb upstream 5000 false Chr19: 36307452-36312451 Glycine max
Glyma.19G109500 5.0kb downstream 5.0kb downstream 24493 true Chr19: 36312452-36336944 Glycine max
Glyma.19G109500 5.0kb downstream 5.0kb downstream 5000 false Chr19: 36331945-36336944 Glycine max
Glyma.19G109500 10.0kb upstream 10.0kb upstream 29493 true Chr19: 36302452-36331944 Glycine max
Glyma.19G109500 10.0kb upstream 10.0kb upstream 10000 false Chr19: 36302452-36312451 Glycine max
Glyma.19G109500 10.0kb downstream 10.0kb downstream 29493 true Chr19: 36312452-36341944 Glycine max
Glyma.19G109500 10.0kb downstream 10.0kb downstream 10000 false Chr19: 36331945-36341944 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301146 5265 Fabidae View MSA
124060805 5270 Rosid View MSA
123746198 5271 Pentapetalae View MSA
122787645 5272 Eudicot View MSA
122046852 5273 Angiosperm View MSA
121349524 5274 Embryophyte View MSA
123426579 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.06949 0.0 9.24742   Low
cufflinks 8.85809 0.0 30.547    
cufflinks 5.06511 0.0 17.9865    
cufflinks 9.55755 0.0 32.6036   High
cufflinks 7.70468 0.0 26.5058    
cufflinks 6.79788 0.0 26.0906    
cufflinks 6.48993 0.0 23.3079    
cufflinks 4.7268 0.0 16.9146    
cufflinks 6.58287 0.0 22.9465    
cufflinks 0.326        
cufflinks 0.336        
cufflinks 0.632       High
cufflinks 0.665       High
cufflinks 0.756       High
cufflinks 0.301        
cufflinks 0.424        
cufflinks 0.185       Low
cufflinks 0.873       High
cufflinks 0.594        
cufflinks 0.394        
cufflinks 0.298        
cufflinks 0.327        
cufflinks 0.355        
cufflinks 0.291        
cufflinks 0.378        
cufflinks 0.32        

0 Strain