Gene : Glyma.17G078700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Genomic Order:  787
Name:  ? Glyma.17G078700 Secondary Identifier:  ? PAC:30481591
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G078700 0.5kb upstream 0.5kb upstream 3844   true Chr17: 6129789-6133632 Glycine max
Glyma.17G078700 0.5kb upstream 0.5kb upstream 500   false Chr17: 6129789-6130288 Glycine max
Glyma.17G078700 0.5kb downstream 0.5kb downstream 3844   true Chr17: 6130289-6134132 Glycine max
Glyma.17G078700 0.5kb downstream 0.5kb downstream 500   false Chr17: 6133633-6134132 Glycine max
Glyma.17G078700 1.0kb upstream 1.0kb upstream 4344   true Chr17: 6129289-6133632 Glycine max
Glyma.17G078700 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6129289-6130288 Glycine max
Glyma.17G078700 1.0kb downstream 1.0kb downstream 4344   true Chr17: 6130289-6134632 Glycine max
Glyma.17G078700 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6133633-6134632 Glycine max
Glyma.17G078700 2.0kb upstream 2.0kb upstream 5344   true Chr17: 6128289-6133632 Glycine max
Glyma.17G078700 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6128289-6130288 Glycine max
Glyma.17G078700 2.0kb downstream 2.0kb downstream 5344   true Chr17: 6130289-6135632 Glycine max
Glyma.17G078700 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6133633-6135632 Glycine max
Glyma.17G078700 5.0kb upstream 5.0kb upstream 8344   true Chr17: 6125289-6133632 Glycine max
Glyma.17G078700 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6125289-6130288 Glycine max
Glyma.17G078700 5.0kb downstream 5.0kb downstream 8344   true Chr17: 6130289-6138632 Glycine max
Glyma.17G078700 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6133633-6138632 Glycine max
Glyma.17G078700 10.0kb upstream 10.0kb upstream 13344   true Chr17: 6120289-6133632 Glycine max
Glyma.17G078700 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6120289-6130288 Glycine max
Glyma.17G078700 10.0kb downstream 10.0kb downstream 13344   true Chr17: 6130289-6143632 Glycine max
Glyma.17G078700 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6133633-6143632 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301113 5265 Fabidae View MSA
124062853 5270 Rosid View MSA
123746510 5271 Pentapetalae View MSA
122790836 5272 Eudicot View MSA
122046944 5273 Angiosperm View MSA
121346353 5274 Embryophyte View MSA
123426361 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.195494 0.0 0.952608 Low Low
cufflinks 10.0895 0.0 35.5233   High
cufflinks 0.56892 0.0 2.60339   Low
cufflinks 1.79695 0.0 6.28947    
cufflinks 7.74943 0.0 24.023    
cufflinks 4.19426 0.0 14.7139    
cufflinks 2.47228 0.0 7.79354    
cufflinks 3.45 0.0 12.7638    
cufflinks 7.34669 0.0 23.0166    
cufflinks 1.584        
cufflinks 3.568        
cufflinks 1.317        
cufflinks 4.641        
cufflinks 5.497       High
cufflinks 2.888        
cufflinks 1.341        
cufflinks 1.467        
cufflinks 0.812       Low
cufflinks 5.722       High
cufflinks 0.932       Low
cufflinks 11.804     High High
cufflinks 1.166        
cufflinks 3.829        
cufflinks 1.636        
cufflinks 1.11        
cufflinks 6.54     High High

0 Strain