Gene : Glyma.17G085700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Genomic Order:  857
Name:  ? Glyma.17G085700 Secondary Identifier:  ? PAC:30479097
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G085700 0.5kb upstream 0.5kb upstream 4473   true Chr17: 6624588-6629060 Glycine max
Glyma.17G085700 0.5kb upstream 0.5kb upstream 500   false Chr17: 6624588-6625087 Glycine max
Glyma.17G085700 0.5kb downstream 0.5kb downstream 4473   true Chr17: 6625088-6629560 Glycine max
Glyma.17G085700 0.5kb downstream 0.5kb downstream 500   false Chr17: 6629061-6629560 Glycine max
Glyma.17G085700 1.0kb upstream 1.0kb upstream 4973   true Chr17: 6624088-6629060 Glycine max
Glyma.17G085700 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6624088-6625087 Glycine max
Glyma.17G085700 1.0kb downstream 1.0kb downstream 4973   true Chr17: 6625088-6630060 Glycine max
Glyma.17G085700 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6629061-6630060 Glycine max
Glyma.17G085700 2.0kb upstream 2.0kb upstream 5973   true Chr17: 6623088-6629060 Glycine max
Glyma.17G085700 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6623088-6625087 Glycine max
Glyma.17G085700 2.0kb downstream 2.0kb downstream 5973   true Chr17: 6625088-6631060 Glycine max
Glyma.17G085700 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6629061-6631060 Glycine max
Glyma.17G085700 5.0kb upstream 5.0kb upstream 8973   true Chr17: 6620088-6629060 Glycine max
Glyma.17G085700 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6620088-6625087 Glycine max
Glyma.17G085700 5.0kb downstream 5.0kb downstream 8973   true Chr17: 6625088-6634060 Glycine max
Glyma.17G085700 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6629061-6634060 Glycine max
Glyma.17G085700 10.0kb upstream 10.0kb upstream 13973   true Chr17: 6615088-6629060 Glycine max
Glyma.17G085700 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6615088-6625087 Glycine max
Glyma.17G085700 10.0kb downstream 10.0kb downstream 13973   true Chr17: 6625088-6639060 Glycine max
Glyma.17G085700 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6629061-6639060 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299156 5265 Fabidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0188 0.0 34.8354   High
cufflinks 6.40533 0.0 17.9094   Low
cufflinks 13.5027 0.0 36.119   High
cufflinks 8.81975 0.0 24.0264    
cufflinks 10.3281 0.0 27.847    
cufflinks 8.30909 0.0 22.6993    
cufflinks 9.53076 0.0 25.8218    
cufflinks 11.5591 0.0 31.038    
cufflinks 8.44495 0.0 23.0475    
cufflinks 4.285       Low
cufflinks 5.774     High  
cufflinks 5.924        
cufflinks 4.837        
cufflinks 6.157        
cufflinks 6.129     High  
cufflinks 5.852        
cufflinks 3.677       Low
cufflinks 4.472       Low
cufflinks 4.85        
cufflinks 5.44        
cufflinks 7.164     High High
cufflinks 5.82        
cufflinks 4.809        
cufflinks 7.47     High High
cufflinks 5.606        
cufflinks 5.597        

0 Strain