Gene : Glyma.17G233000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Genomic Order:  2330
Name:  ? Glyma.17G233000 Secondary Identifier:  ? PAC:30482409
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G233000 0.5kb upstream 0.5kb upstream 16444   true Chr17: 38827731-38844174 Glycine max
Glyma.17G233000 0.5kb upstream 0.5kb upstream 500   false Chr17: 38827731-38828230 Glycine max
Glyma.17G233000 0.5kb downstream 0.5kb downstream 16444   true Chr17: 38828231-38844674 Glycine max
Glyma.17G233000 0.5kb downstream 0.5kb downstream 500   false Chr17: 38844175-38844674 Glycine max
Glyma.17G233000 1.0kb upstream 1.0kb upstream 16944   true Chr17: 38827231-38844174 Glycine max
Glyma.17G233000 1.0kb upstream 1.0kb upstream 1000   false Chr17: 38827231-38828230 Glycine max
Glyma.17G233000 1.0kb downstream 1.0kb downstream 16944   true Chr17: 38828231-38845174 Glycine max
Glyma.17G233000 1.0kb downstream 1.0kb downstream 1000   false Chr17: 38844175-38845174 Glycine max
Glyma.17G233000 2.0kb upstream 2.0kb upstream 17944   true Chr17: 38826231-38844174 Glycine max
Glyma.17G233000 2.0kb upstream 2.0kb upstream 2000   false Chr17: 38826231-38828230 Glycine max
Glyma.17G233000 2.0kb downstream 2.0kb downstream 17944   true Chr17: 38828231-38846174 Glycine max
Glyma.17G233000 2.0kb downstream 2.0kb downstream 2000   false Chr17: 38844175-38846174 Glycine max
Glyma.17G233000 5.0kb upstream 5.0kb upstream 20944   true Chr17: 38823231-38844174 Glycine max
Glyma.17G233000 5.0kb upstream 5.0kb upstream 5000   false Chr17: 38823231-38828230 Glycine max
Glyma.17G233000 5.0kb downstream 5.0kb downstream 20944   true Chr17: 38828231-38849174 Glycine max
Glyma.17G233000 5.0kb downstream 5.0kb downstream 5000   false Chr17: 38844175-38849174 Glycine max
Glyma.17G233000 10.0kb upstream 10.0kb upstream 25944   true Chr17: 38818231-38844174 Glycine max
Glyma.17G233000 10.0kb upstream 10.0kb upstream 10000   false Chr17: 38818231-38828230 Glycine max
Glyma.17G233000 10.0kb downstream 10.0kb downstream 25944   true Chr17: 38828231-38854174 Glycine max
Glyma.17G233000 10.0kb downstream 10.0kb downstream 10000   false Chr17: 38844175-38854174 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303308 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.3169 0.0 31.3067   High
cufflinks 8.17858 0.0 24.3907    
cufflinks 7.66795 0.0 22.7202    
cufflinks 7.95394 0.0 33.5525    
cufflinks 8.22206 0.0 28.6603    
cufflinks 5.41629 0.0 16.2433   Low
cufflinks 7.84783 0.0 23.2437    
cufflinks 5.55874 0.0 16.6564   Low
cufflinks 8.10247 0.0 24.216    
cufflinks 0.626       Low
cufflinks 0.744        
cufflinks 0.925        
cufflinks 0.934        
cufflinks 1.082       High
cufflinks 0.981        
cufflinks 0.981        
cufflinks 0.501       Low
cufflinks 1.104       High
cufflinks 0.85        
cufflinks 0.992        
cufflinks 0.786        
cufflinks 1.003        
cufflinks 0.895        
cufflinks 0.719        
cufflinks 0.983        
cufflinks 0.816        

0 Strain