Gene : Glyma.03G213600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM Genomic Order:  2136
Name:  ? Glyma.03G213600 Secondary Identifier:  ? PAC:30515573
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G213600 0.5kb upstream 0.5kb upstream 3253 true Chr03: 41873352-41876604 Glycine max
Glyma.03G213600 0.5kb upstream 0.5kb upstream 500 false Chr03: 41873352-41873851 Glycine max
Glyma.03G213600 0.5kb downstream 0.5kb downstream 3253 true Chr03: 41873852-41877104 Glycine max
Glyma.03G213600 0.5kb downstream 0.5kb downstream 500 false Chr03: 41876605-41877104 Glycine max
Glyma.03G213600 1.0kb upstream 1.0kb upstream 3753 true Chr03: 41872852-41876604 Glycine max
Glyma.03G213600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41872852-41873851 Glycine max
Glyma.03G213600 1.0kb downstream 1.0kb downstream 3753 true Chr03: 41873852-41877604 Glycine max
Glyma.03G213600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41876605-41877604 Glycine max
Glyma.03G213600 2.0kb upstream 2.0kb upstream 4753 true Chr03: 41871852-41876604 Glycine max
Glyma.03G213600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41871852-41873851 Glycine max
Glyma.03G213600 2.0kb downstream 2.0kb downstream 4753 true Chr03: 41873852-41878604 Glycine max
Glyma.03G213600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41876605-41878604 Glycine max
Glyma.03G213600 5.0kb upstream 5.0kb upstream 7753 true Chr03: 41868852-41876604 Glycine max
Glyma.03G213600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41868852-41873851 Glycine max
Glyma.03G213600 5.0kb downstream 5.0kb downstream 7753 true Chr03: 41873852-41881604 Glycine max
Glyma.03G213600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41876605-41881604 Glycine max
Glyma.03G213600 10.0kb upstream 10.0kb upstream 12753 true Chr03: 41863852-41876604 Glycine max
Glyma.03G213600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41863852-41873851 Glycine max
Glyma.03G213600 10.0kb downstream 10.0kb downstream 12753 true Chr03: 41873852-41886604 Glycine max
Glyma.03G213600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41876605-41886604 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309852 5265 Fabidae View MSA
124074135 5270 Rosid View MSA
123737772 5271 Pentapetalae View MSA
122793986 5272 Eudicot View MSA
122047121 5273 Angiosperm View MSA
121348903 5274 Embryophyte View MSA
123424585 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.9038 0.0 61.8493   Low
cufflinks 101.68 0.0 458.737 High  
cufflinks 35.9766 0.0 139.194 High  
cufflinks 136.038 0.0 619.545 High  
cufflinks 77.3676 0.0 328.2 High  
cufflinks 36.7218 0.0 140.711 High  
cufflinks 169.911 0.0 868.664 High High
cufflinks 132.925 0.0 594.111 High  
cufflinks 81.5053 0.0 348.675 High  
cufflinks 5.827        
cufflinks 5.073        
cufflinks 4.867        
cufflinks 2.76        
cufflinks 3.42        
cufflinks 9.944     High High
cufflinks 2.718        
cufflinks 5.447        
cufflinks 6.757       High
cufflinks 7.673     High High
cufflinks 2.482       Low
cufflinks 5.461        
cufflinks 2.645       Low
cufflinks 2.66       Low
cufflinks 4.898        
cufflinks 2.467       Low
cufflinks 3.185        

0 Strain