Gene : Glyma.03G261800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12802:SF43 - PROTEIN CCA1-RELATED Genomic Order:  2618
Name:  ? Glyma.03G261800 Secondary Identifier:  ? PAC:30515525
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G261800 0.5kb upstream 0.5kb upstream 9213 true Chr03: 45501600-45510812 Glycine max
Glyma.03G261800 0.5kb upstream 0.5kb upstream 500 false Chr03: 45501600-45502099 Glycine max
Glyma.03G261800 0.5kb downstream 0.5kb downstream 9213 true Chr03: 45502100-45511312 Glycine max
Glyma.03G261800 0.5kb downstream 0.5kb downstream 500 false Chr03: 45510813-45511312 Glycine max
Glyma.03G261800 1.0kb upstream 1.0kb upstream 9713 true Chr03: 45501100-45510812 Glycine max
Glyma.03G261800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 45501100-45502099 Glycine max
Glyma.03G261800 1.0kb downstream 1.0kb downstream 9713 true Chr03: 45502100-45511812 Glycine max
Glyma.03G261800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 45510813-45511812 Glycine max
Glyma.03G261800 2.0kb upstream 2.0kb upstream 10713 true Chr03: 45500100-45510812 Glycine max
Glyma.03G261800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 45500100-45502099 Glycine max
Glyma.03G261800 2.0kb downstream 2.0kb downstream 10713 true Chr03: 45502100-45512812 Glycine max
Glyma.03G261800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 45510813-45512812 Glycine max
Glyma.03G261800 5.0kb upstream 5.0kb upstream 13713 true Chr03: 45497100-45510812 Glycine max
Glyma.03G261800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 45497100-45502099 Glycine max
Glyma.03G261800 5.0kb downstream 5.0kb downstream 13713 true Chr03: 45502100-45515812 Glycine max
Glyma.03G261800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 45510813-45515812 Glycine max
Glyma.03G261800 10.0kb upstream 10.0kb upstream 18713 true Chr03: 45492100-45510812 Glycine max
Glyma.03G261800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 45492100-45502099 Glycine max
Glyma.03G261800 10.0kb downstream 10.0kb downstream 18713 true Chr03: 45502100-45520812 Glycine max
Glyma.03G261800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 45510813-45520812 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311594 5265 Fabidae View MSA
124066959 5270 Rosid View MSA
123746755 5271 Pentapetalae View MSA
122793236 5272 Eudicot View MSA
122048982 5273 Angiosperm View MSA
121350117 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 202.563 0.0 2777.16 High High
cufflinks 4.06994 0.0 17.0556    
cufflinks 14.1289 0.0 62.9608    
cufflinks 6.18977 0.0 24.2383    
cufflinks 0.727741 0.0 5.27073    
cufflinks 3.43304 0.0 13.3676    
cufflinks 1.39677 0.0 6.22023    
cufflinks 3.79444 0.0 17.7379    
cufflinks 0.394017 0.0 3.39072   Low
cufflinks 2.308        
cufflinks 0.389        
cufflinks 0.373        
cufflinks 0.502        
cufflinks 0.076       Low
cufflinks 0.196       Low
cufflinks 6.493       High
cufflinks 0.241        
cufflinks 0.207       Low
cufflinks 2.738        
cufflinks 1.521        
cufflinks 0.378        
cufflinks 3.185       High
cufflinks 3.451       High
cufflinks 0.534        
cufflinks 4.881       High
cufflinks 1.182        

0 Strain