Gene : Glyma.03G182600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Genomic Order:  1826
Name:  ? Glyma.03G182600 Secondary Identifier:  ? PAC:30518696
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G182600 0.5kb upstream 0.5kb upstream 5773 true Chr03: 39449798-39455570 Glycine max
Glyma.03G182600 0.5kb upstream 0.5kb upstream 500 false Chr03: 39449798-39450297 Glycine max
Glyma.03G182600 0.5kb downstream 0.5kb downstream 5773 true Chr03: 39450298-39456070 Glycine max
Glyma.03G182600 0.5kb downstream 0.5kb downstream 500 false Chr03: 39455571-39456070 Glycine max
Glyma.03G182600 1.0kb upstream 1.0kb upstream 6273 true Chr03: 39449298-39455570 Glycine max
Glyma.03G182600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39449298-39450297 Glycine max
Glyma.03G182600 1.0kb downstream 1.0kb downstream 6273 true Chr03: 39450298-39456570 Glycine max
Glyma.03G182600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39455571-39456570 Glycine max
Glyma.03G182600 2.0kb upstream 2.0kb upstream 7273 true Chr03: 39448298-39455570 Glycine max
Glyma.03G182600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39448298-39450297 Glycine max
Glyma.03G182600 2.0kb downstream 2.0kb downstream 7273 true Chr03: 39450298-39457570 Glycine max
Glyma.03G182600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39455571-39457570 Glycine max
Glyma.03G182600 5.0kb upstream 5.0kb upstream 10273 true Chr03: 39445298-39455570 Glycine max
Glyma.03G182600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39445298-39450297 Glycine max
Glyma.03G182600 5.0kb downstream 5.0kb downstream 10273 true Chr03: 39450298-39460570 Glycine max
Glyma.03G182600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39455571-39460570 Glycine max
Glyma.03G182600 10.0kb upstream 10.0kb upstream 15273 true Chr03: 39440298-39455570 Glycine max
Glyma.03G182600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39440298-39450297 Glycine max
Glyma.03G182600 10.0kb downstream 10.0kb downstream 15273 true Chr03: 39450298-39465570 Glycine max
Glyma.03G182600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39455571-39465570 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311038 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.4958 0.0 52.5629   High
cufflinks 8.66222 0.0 23.2623    
cufflinks 10.5652 0.0 28.2123    
cufflinks 5.79195 0.0 15.8989    
cufflinks 4.2064 0.0 11.9189    
cufflinks 3.68249 0.0 10.5769    
cufflinks 4.09856 0.0 11.6537    
cufflinks 6.8954 0.0 18.7059    
cufflinks 4.00066 0.0 11.3774    
cufflinks 3.575        
cufflinks 0.46       Low
cufflinks 5.992        
cufflinks 2.626        
cufflinks 2.518        
cufflinks 0.702       Low
cufflinks 9.009     High  
cufflinks 1.238        
cufflinks 4.928        
cufflinks 5.071        
cufflinks 10.372     High High
cufflinks 0.418       Low
cufflinks 10.501     High High
cufflinks 11.056     High High
cufflinks 0.654       Low
cufflinks 10.396     High High
cufflinks 0.978        

0 Strain