Gene : Glyma.04G047800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24012:SF478 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MJH23 Genomic Order:  478
Name:  ? Glyma.04G047800 Secondary Identifier:  ? PAC:30491213
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G047800 0.5kb upstream 0.5kb upstream 2718 true Chr04: 3840281-3842998 Glycine max
Glyma.04G047800 0.5kb upstream 0.5kb upstream 500 false Chr04: 3840281-3840780 Glycine max
Glyma.04G047800 0.5kb downstream 0.5kb downstream 2718 true Chr04: 3840781-3843498 Glycine max
Glyma.04G047800 0.5kb downstream 0.5kb downstream 500 false Chr04: 3842999-3843498 Glycine max
Glyma.04G047800 1.0kb upstream 1.0kb upstream 3218 true Chr04: 3839781-3842998 Glycine max
Glyma.04G047800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 3839781-3840780 Glycine max
Glyma.04G047800 1.0kb downstream 1.0kb downstream 3218 true Chr04: 3840781-3843998 Glycine max
Glyma.04G047800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 3842999-3843998 Glycine max
Glyma.04G047800 2.0kb upstream 2.0kb upstream 4218 true Chr04: 3838781-3842998 Glycine max
Glyma.04G047800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 3838781-3840780 Glycine max
Glyma.04G047800 2.0kb downstream 2.0kb downstream 4218 true Chr04: 3840781-3844998 Glycine max
Glyma.04G047800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 3842999-3844998 Glycine max
Glyma.04G047800 5.0kb upstream 5.0kb upstream 7218 true Chr04: 3835781-3842998 Glycine max
Glyma.04G047800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 3835781-3840780 Glycine max
Glyma.04G047800 5.0kb downstream 5.0kb downstream 7218 true Chr04: 3840781-3847998 Glycine max
Glyma.04G047800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 3842999-3847998 Glycine max
Glyma.04G047800 10.0kb upstream 10.0kb upstream 12218 true Chr04: 3830781-3842998 Glycine max
Glyma.04G047800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 3830781-3840780 Glycine max
Glyma.04G047800 10.0kb downstream 10.0kb downstream 12218 true Chr04: 3840781-3852998 Glycine max
Glyma.04G047800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 3842999-3852998 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301715 5265 Fabidae View MSA
124072663 5270 Rosid View MSA
123742464 5271 Pentapetalae View MSA
122794211 5272 Eudicot View MSA
122048542 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351304 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.63314 0.0 21.252    
cufflinks 9.84275 0.0 26.8369   High
cufflinks 7.05515 0.0 19.6994    
cufflinks 5.11759 0.0 14.8702    
cufflinks 5.46939 0.0 15.8001    
cufflinks 4.89455 0.0 14.3099    
cufflinks 9.20897 0.0 25.2464   High
cufflinks 3.97975 0.0 11.9966   Low
cufflinks 5.48328 0.0 15.8081    
cufflinks 1.99       Low
cufflinks 4.505        
cufflinks 7.456     High  
cufflinks 3.765        
cufflinks 4.491        
cufflinks 4.997        
cufflinks 9.36     High  
cufflinks 2.827       Low
cufflinks 7.607     High  
cufflinks 11.323     High High
cufflinks 9.761     High High
cufflinks 3.163       Low
cufflinks 10.341     High High
cufflinks 10.174     High High
cufflinks 4.23        
cufflinks 9.072     High  
cufflinks 3.84        

0 Strain