Gene : Glyma.04G080500 G. max Wm82.a2.v1
Defline:  (1 of 1) PF05383//PF08777//PF14259 - La domain (La) // RNA binding motif (RRM_3) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Genomic Order:  805
Name:  ? Glyma.04G080500 Secondary Identifier:  ? PAC:30488887
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G080500 0.5kb upstream 0.5kb upstream 4342 true Chr04: 6766813-6771154 Glycine max
Glyma.04G080500 0.5kb upstream 0.5kb upstream 500 false Chr04: 6766813-6767312 Glycine max
Glyma.04G080500 0.5kb downstream 0.5kb downstream 4342 true Chr04: 6767313-6771654 Glycine max
Glyma.04G080500 0.5kb downstream 0.5kb downstream 500 false Chr04: 6771155-6771654 Glycine max
Glyma.04G080500 1.0kb upstream 1.0kb upstream 4842 true Chr04: 6766313-6771154 Glycine max
Glyma.04G080500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 6766313-6767312 Glycine max
Glyma.04G080500 1.0kb downstream 1.0kb downstream 4842 true Chr04: 6767313-6772154 Glycine max
Glyma.04G080500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 6771155-6772154 Glycine max
Glyma.04G080500 2.0kb upstream 2.0kb upstream 5842 true Chr04: 6765313-6771154 Glycine max
Glyma.04G080500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 6765313-6767312 Glycine max
Glyma.04G080500 2.0kb downstream 2.0kb downstream 5842 true Chr04: 6767313-6773154 Glycine max
Glyma.04G080500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 6771155-6773154 Glycine max
Glyma.04G080500 5.0kb upstream 5.0kb upstream 8842 true Chr04: 6762313-6771154 Glycine max
Glyma.04G080500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 6762313-6767312 Glycine max
Glyma.04G080500 5.0kb downstream 5.0kb downstream 8842 true Chr04: 6767313-6776154 Glycine max
Glyma.04G080500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 6771155-6776154 Glycine max
Glyma.04G080500 10.0kb upstream 10.0kb upstream 13842 true Chr04: 6757313-6771154 Glycine max
Glyma.04G080500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 6757313-6767312 Glycine max
Glyma.04G080500 10.0kb downstream 10.0kb downstream 13842 true Chr04: 6767313-6781154 Glycine max
Glyma.04G080500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 6771155-6781154 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041135 5273 Angiosperm View MSA
122309017 5265 Fabidae View MSA
124064026 5270 Rosid View MSA
123746572 5271 Pentapetalae View MSA
122791313 5272 Eudicot View MSA
121349930 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.786 0.0 47.6332   High
cufflinks 12.1258 0.0 32.3668    
cufflinks 7.47012 0.0 20.2511   Low
cufflinks 10.3027 0.0 27.5643    
cufflinks 17.3481 0.0 46.4232   High
cufflinks 11.897 0.0 31.7696    
cufflinks 12.9961 0.0 34.6791    
cufflinks 15.4936 0.0 41.391    
cufflinks 12.4869 0.0 33.3245    
cufflinks 5.558        
cufflinks 3.997        
cufflinks 9.679     High  
cufflinks 17.947     High High
cufflinks 23.865     High High
cufflinks 4.87        
cufflinks 4.597        
cufflinks 7.368     High  
cufflinks 8.304     High  
cufflinks 9.369     High  
cufflinks 3.332       Low
cufflinks 5.771     High  
cufflinks 4.063        
cufflinks 5.446        
cufflinks 4.086        
cufflinks 4.223        
cufflinks 7.081     High  

0 Strain