Gene : Glyma.19G183100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Genomic Order:  1831
Name:  ? Glyma.19G183100 Secondary Identifier:  ? PAC:30512367
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G183100 0.5kb upstream 0.5kb upstream 6767 true Chr19: 44174860-44181626 Glycine max
Glyma.19G183100 0.5kb upstream 0.5kb upstream 500 false Chr19: 44174860-44175359 Glycine max
Glyma.19G183100 0.5kb downstream 0.5kb downstream 6767 true Chr19: 44175360-44182126 Glycine max
Glyma.19G183100 0.5kb downstream 0.5kb downstream 500 false Chr19: 44181627-44182126 Glycine max
Glyma.19G183100 1.0kb upstream 1.0kb upstream 7267 true Chr19: 44174360-44181626 Glycine max
Glyma.19G183100 1.0kb upstream 1.0kb upstream 1000 false Chr19: 44174360-44175359 Glycine max
Glyma.19G183100 1.0kb downstream 1.0kb downstream 7267 true Chr19: 44175360-44182626 Glycine max
Glyma.19G183100 1.0kb downstream 1.0kb downstream 1000 false Chr19: 44181627-44182626 Glycine max
Glyma.19G183100 2.0kb upstream 2.0kb upstream 8267 true Chr19: 44173360-44181626 Glycine max
Glyma.19G183100 2.0kb upstream 2.0kb upstream 2000 false Chr19: 44173360-44175359 Glycine max
Glyma.19G183100 2.0kb downstream 2.0kb downstream 8267 true Chr19: 44175360-44183626 Glycine max
Glyma.19G183100 2.0kb downstream 2.0kb downstream 2000 false Chr19: 44181627-44183626 Glycine max
Glyma.19G183100 5.0kb upstream 5.0kb upstream 11267 true Chr19: 44170360-44181626 Glycine max
Glyma.19G183100 5.0kb upstream 5.0kb upstream 5000 false Chr19: 44170360-44175359 Glycine max
Glyma.19G183100 5.0kb downstream 5.0kb downstream 11267 true Chr19: 44175360-44186626 Glycine max
Glyma.19G183100 5.0kb downstream 5.0kb downstream 5000 false Chr19: 44181627-44186626 Glycine max
Glyma.19G183100 10.0kb upstream 10.0kb upstream 16267 true Chr19: 44165360-44181626 Glycine max
Glyma.19G183100 10.0kb upstream 10.0kb upstream 10000 false Chr19: 44165360-44175359 Glycine max
Glyma.19G183100 10.0kb downstream 10.0kb downstream 16267 true Chr19: 44175360-44191626 Glycine max
Glyma.19G183100 10.0kb downstream 10.0kb downstream 10000 false Chr19: 44181627-44191626 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311038 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.3884 0.0 69.4171   High
cufflinks 5.78462 0.0 21.0062    
cufflinks 7.08473 0.0 24.7236    
cufflinks 4.12553 0.0 18.1811    
cufflinks 2.43835 0.0 9.69691    
cufflinks 2.35528 0.0 7.2333   Low
cufflinks 3.41902 0.0 12.0002    
cufflinks 4.29932 0.0 16.5192    
cufflinks 2.73309 0.0 10.199    
cufflinks 0.359        
cufflinks 0.107       Low
cufflinks 1.004        
cufflinks 0.292        
cufflinks 0.252        
cufflinks 0.208        
cufflinks 1.597       High
cufflinks 0.163        
cufflinks 0.833        
cufflinks 0.696        
cufflinks 1.85       High
cufflinks 0.079       Low
cufflinks 1.753       High
cufflinks 1.749       High
cufflinks 0.155        
cufflinks 1.768       High
cufflinks 0.144       Low

0 Strain