Gene : Glyma.20G091200 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR12565:SF178 - TRANSCRIPTION FACTOR PIF3 Genomic Order:  912
Name:  ? Glyma.20G091200 Secondary Identifier:  ? PAC:30522766
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G091200 0.5kb upstream 0.5kb upstream 5443 true Chr20: 33451707-33457149 Glycine max
Glyma.20G091200 0.5kb upstream 0.5kb upstream 500 false Chr20: 33456650-33457149 Glycine max
Glyma.20G091200 0.5kb downstream 0.5kb downstream 5443 true Chr20: 33451207-33456649 Glycine max
Glyma.20G091200 0.5kb downstream 0.5kb downstream 500 false Chr20: 33451207-33451706 Glycine max
Glyma.20G091200 1.0kb upstream 1.0kb upstream 5943 true Chr20: 33451707-33457649 Glycine max
Glyma.20G091200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 33456650-33457649 Glycine max
Glyma.20G091200 1.0kb downstream 1.0kb downstream 5943 true Chr20: 33450707-33456649 Glycine max
Glyma.20G091200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 33450707-33451706 Glycine max
Glyma.20G091200 2.0kb upstream 2.0kb upstream 6943 true Chr20: 33451707-33458649 Glycine max
Glyma.20G091200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 33456650-33458649 Glycine max
Glyma.20G091200 2.0kb downstream 2.0kb downstream 6943 true Chr20: 33449707-33456649 Glycine max
Glyma.20G091200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 33449707-33451706 Glycine max
Glyma.20G091200 5.0kb upstream 5.0kb upstream 9943 true Chr20: 33451707-33461649 Glycine max
Glyma.20G091200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 33456650-33461649 Glycine max
Glyma.20G091200 5.0kb downstream 5.0kb downstream 9943 true Chr20: 33446707-33456649 Glycine max
Glyma.20G091200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 33446707-33451706 Glycine max
Glyma.20G091200 10.0kb upstream 10.0kb upstream 14943 true Chr20: 33451707-33466649 Glycine max
Glyma.20G091200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 33456650-33466649 Glycine max
Glyma.20G091200 10.0kb downstream 10.0kb downstream 14943 true Chr20: 33441707-33456649 Glycine max
Glyma.20G091200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 33441707-33451706 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300539 5265 Fabidae View MSA
124069526 5270 Rosid View MSA
123737897 5271 Pentapetalae View MSA
122794460 5272 Eudicot View MSA
122048181 5273 Angiosperm View MSA
121348763 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.392985 0.0 1.41057   Low
cufflinks 1.29352 0.0 4.08084    
cufflinks 1.08061 0.0 3.48455    
cufflinks 1.73226 0.0 5.23485    
cufflinks 4.91311 0.0 13.3253   High
cufflinks 1.65131 0.0 5.03012    
cufflinks 9.18452 0.0 24.5055   High
cufflinks 3.10969 0.0 8.73116    
cufflinks 0.836876 0.0 2.79945    
cufflinks 3.555       High
cufflinks 0.591        
cufflinks 1.336        
cufflinks 0.836        
cufflinks 1.257        
cufflinks 0.053       Low
cufflinks 1.113        
cufflinks 0.255        
cufflinks 2.853       High
cufflinks 0.834        
cufflinks 0.732        
cufflinks 0.472        
cufflinks 1.032        
cufflinks 1.007        
cufflinks 0.103       Low
cufflinks 1.009        
cufflinks 0.404        

0 Strain