Gene : Glyma.20G135800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 Genomic Order:  1358
Name:  ? Glyma.20G135800 Secondary Identifier:  ? PAC:30520794
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G135800 0.5kb upstream 0.5kb upstream 30048 true Chr20: 37524212-37554259 Glycine max
Glyma.20G135800 0.5kb upstream 0.5kb upstream 500 false Chr20: 37553760-37554259 Glycine max
Glyma.20G135800 0.5kb downstream 0.5kb downstream 30048 true Chr20: 37523712-37553759 Glycine max
Glyma.20G135800 0.5kb downstream 0.5kb downstream 500 false Chr20: 37523712-37524211 Glycine max
Glyma.20G135800 1.0kb upstream 1.0kb upstream 30548 true Chr20: 37524212-37554759 Glycine max
Glyma.20G135800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 37553760-37554759 Glycine max
Glyma.20G135800 1.0kb downstream 1.0kb downstream 30548 true Chr20: 37523212-37553759 Glycine max
Glyma.20G135800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 37523212-37524211 Glycine max
Glyma.20G135800 2.0kb upstream 2.0kb upstream 31548 true Chr20: 37524212-37555759 Glycine max
Glyma.20G135800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 37553760-37555759 Glycine max
Glyma.20G135800 2.0kb downstream 2.0kb downstream 31548 true Chr20: 37522212-37553759 Glycine max
Glyma.20G135800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 37522212-37524211 Glycine max
Glyma.20G135800 5.0kb upstream 5.0kb upstream 34548 true Chr20: 37524212-37558759 Glycine max
Glyma.20G135800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 37553760-37558759 Glycine max
Glyma.20G135800 5.0kb downstream 5.0kb downstream 34548 true Chr20: 37519212-37553759 Glycine max
Glyma.20G135800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 37519212-37524211 Glycine max
Glyma.20G135800 10.0kb upstream 10.0kb upstream 39548 true Chr20: 37524212-37563759 Glycine max
Glyma.20G135800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 37553760-37563759 Glycine max
Glyma.20G135800 10.0kb downstream 10.0kb downstream 39548 true Chr20: 37514212-37553759 Glycine max
Glyma.20G135800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 37514212-37524211 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306677 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.73443 0.0 30.4532    
cufflinks 6.80099 0.0 27.1766    
cufflinks 7.04702 0.0 29.2475    
cufflinks 6.50175 0.0 28.8768    
cufflinks 5.0379 0.0 26.162    
cufflinks 3.92875 0.0 15.1402   Low
cufflinks 6.56756 0.0 26.4139    
cufflinks 5.60927 0.0 22.6623    
cufflinks 5.62278 0.0 23.8176    
cufflinks 0.166       Low
cufflinks 0.173        
cufflinks 0.233        
cufflinks 0.179        
cufflinks 0.184        
cufflinks 0.275        
cufflinks 0.292       High
cufflinks 0.122       Low
cufflinks 0.26        
cufflinks 0.221        
cufflinks 0.334       High
cufflinks 0.2        
cufflinks 0.29       High
cufflinks 0.231        
cufflinks 0.184        
cufflinks 0.304       High
cufflinks 0.192        

0 Strain