Gene : Glyma.20G155400 G. max Wm82.a2.v1
Defline:  (1 of 14) KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) Genomic Order:  1554
Name:  ? Glyma.20G155400 Secondary Identifier:  ? PAC:30519741
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G155400 0.5kb upstream 0.5kb upstream 4660 true Chr20: 39424450-39429109 Glycine max
Glyma.20G155400 0.5kb upstream 0.5kb upstream 500 false Chr20: 39424450-39424949 Glycine max
Glyma.20G155400 0.5kb downstream 0.5kb downstream 4660 true Chr20: 39424950-39429609 Glycine max
Glyma.20G155400 0.5kb downstream 0.5kb downstream 500 false Chr20: 39429110-39429609 Glycine max
Glyma.20G155400 1.0kb upstream 1.0kb upstream 5160 true Chr20: 39423950-39429109 Glycine max
Glyma.20G155400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 39423950-39424949 Glycine max
Glyma.20G155400 1.0kb downstream 1.0kb downstream 5160 true Chr20: 39424950-39430109 Glycine max
Glyma.20G155400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 39429110-39430109 Glycine max
Glyma.20G155400 2.0kb upstream 2.0kb upstream 6160 true Chr20: 39422950-39429109 Glycine max
Glyma.20G155400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 39422950-39424949 Glycine max
Glyma.20G155400 2.0kb downstream 2.0kb downstream 6160 true Chr20: 39424950-39431109 Glycine max
Glyma.20G155400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 39429110-39431109 Glycine max
Glyma.20G155400 5.0kb upstream 5.0kb upstream 9160 true Chr20: 39419950-39429109 Glycine max
Glyma.20G155400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 39419950-39424949 Glycine max
Glyma.20G155400 5.0kb downstream 5.0kb downstream 9160 true Chr20: 39424950-39434109 Glycine max
Glyma.20G155400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 39429110-39434109 Glycine max
Glyma.20G155400 10.0kb upstream 10.0kb upstream 14160 true Chr20: 39414950-39429109 Glycine max
Glyma.20G155400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 39414950-39424949 Glycine max
Glyma.20G155400 10.0kb downstream 10.0kb downstream 14160 true Chr20: 39424950-39439109 Glycine max
Glyma.20G155400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 39429110-39439109 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309113 5265 Fabidae View MSA
124069321 5270 Rosid View MSA
123751972 5271 Pentapetalae View MSA
122797642 5272 Eudicot View MSA
122042700 5273 Angiosperm View MSA
121346873 5274 Embryophyte View MSA
123428073 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.9316 0.0 106.393 High High
cufflinks 25.2235 0.0 95.03 High  
cufflinks 28.3944 0.0 97.4185 High  
cufflinks 19.1418 0.0 71.6474    
cufflinks 25.5004 0.0 95.6885 High  
cufflinks 16.0397 0.0 53.5011   Low
cufflinks 22.5925 0.0 84.8568 High  
cufflinks 30.604 0.0 117.008 High High
cufflinks 18.7716 0.0 70.0663    
cufflinks 5.365        
cufflinks 12.3     High High
cufflinks 4.045       Low
cufflinks 4.775       Low
cufflinks 5.874        
cufflinks 10.532     High High
cufflinks 8.344     High  
cufflinks 6.301     High  
cufflinks 4.356       Low
cufflinks 6.608        
cufflinks 7.548     High  
cufflinks 12.37     High High
cufflinks 8.3     High  
cufflinks 8.717     High  
cufflinks 9.038     High  
cufflinks 7.502     High  
cufflinks 5.906        

0 Strain