Gene : Glyma.U029000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Genomic Order:  5
Name:  ? Glyma.U029000 Secondary Identifier:  ? PAC:30523549
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U029000 0.5kb upstream 0.5kb upstream 16685 true scaffold_28: 93587-110271 Glycine max
Glyma.U029000 0.5kb upstream 0.5kb upstream 500 false scaffold_28: 93587-94086 Glycine max
Glyma.U029000 0.5kb downstream 0.5kb downstream 16685 true scaffold_28: 94087-110771 Glycine max
Glyma.U029000 0.5kb downstream 0.5kb downstream 500 false scaffold_28: 110272-110771 Glycine max
Glyma.U029000 1.0kb upstream 1.0kb upstream 17185 true scaffold_28: 93087-110271 Glycine max
Glyma.U029000 1.0kb upstream 1.0kb upstream 1000 false scaffold_28: 93087-94086 Glycine max
Glyma.U029000 1.0kb downstream 1.0kb downstream 17185 true scaffold_28: 94087-111271 Glycine max
Glyma.U029000 1.0kb downstream 1.0kb downstream 1000 false scaffold_28: 110272-111271 Glycine max
Glyma.U029000 2.0kb upstream 2.0kb upstream 18185 true scaffold_28: 92087-110271 Glycine max
Glyma.U029000 2.0kb upstream 2.0kb upstream 2000 false scaffold_28: 92087-94086 Glycine max
Glyma.U029000 2.0kb downstream 2.0kb downstream 18185 true scaffold_28: 94087-112271 Glycine max
Glyma.U029000 2.0kb downstream 2.0kb downstream 2000 false scaffold_28: 110272-112271 Glycine max
Glyma.U029000 5.0kb upstream 5.0kb upstream 21185 true scaffold_28: 89087-110271 Glycine max
Glyma.U029000 5.0kb upstream 5.0kb upstream 5000 false scaffold_28: 89087-94086 Glycine max
Glyma.U029000 5.0kb downstream 5.0kb downstream 21185 true scaffold_28: 94087-115271 Glycine max
Glyma.U029000 5.0kb downstream 5.0kb downstream 5000 false scaffold_28: 110272-115271 Glycine max
Glyma.U029000 10.0kb upstream 10.0kb upstream 26185 true scaffold_28: 84087-110271 Glycine max
Glyma.U029000 10.0kb upstream 10.0kb upstream 10000 false scaffold_28: 84087-94086 Glycine max
Glyma.U029000 10.0kb downstream 10.0kb downstream 26185 true scaffold_28: 94087-120271 Glycine max
Glyma.U029000 10.0kb downstream 10.0kb downstream 10000 false scaffold_28: 110272-120271 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303308 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.3833 0.0 40.6813   High
cufflinks 7.6645 0.0 29.4824    
cufflinks 9.19107 0.0 35.6628    
cufflinks 7.32193 0.0 31.5958    
cufflinks 6.32156 0.0 24.4297    
cufflinks 5.05376 0.0 19.6775   Low
cufflinks 9.75517 0.0 37.9747   High
cufflinks 6.03982 0.0 23.3613    
cufflinks 7.26228 0.0 27.9364    
cufflinks 0.266       Low
cufflinks 0.385        
cufflinks 0.402        
cufflinks 0.352        
cufflinks 0.339        
cufflinks 0.426        
cufflinks 0.442        
cufflinks 0.254       Low
cufflinks 0.478       High
cufflinks 0.37        
cufflinks 0.436        
cufflinks 0.384        
cufflinks 0.448        
cufflinks 0.372        
cufflinks 0.414        
cufflinks 0.439        
cufflinks 0.413        

0 Strain