Gene : Sevir.1G055500 S. viridis v2.1
Defline:  (1 of 13) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  615
Name:  ? Sevir.1G055500 Secondary Identifier:  ? PAC:40606717
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.1G055500 0.5kb upstream 0.5kb upstream 4577 true Chr_01: 5212497-5217073 Setaria viridis
Sevir.1G055500 0.5kb upstream 0.5kb upstream 500 false Chr_01: 5212497-5212996 Setaria viridis
Sevir.1G055500 0.5kb downstream 0.5kb downstream 4577 true Chr_01: 5212997-5217573 Setaria viridis
Sevir.1G055500 0.5kb downstream 0.5kb downstream 500 false Chr_01: 5217074-5217573 Setaria viridis
Sevir.1G055500 1.0kb upstream 1.0kb upstream 5077 true Chr_01: 5211997-5217073 Setaria viridis
Sevir.1G055500 1.0kb upstream 1.0kb upstream 1000 false Chr_01: 5211997-5212996 Setaria viridis
Sevir.1G055500 1.0kb downstream 1.0kb downstream 5077 true Chr_01: 5212997-5218073 Setaria viridis
Sevir.1G055500 1.0kb downstream 1.0kb downstream 1000 false Chr_01: 5217074-5218073 Setaria viridis
Sevir.1G055500 2.0kb upstream 2.0kb upstream 6077 true Chr_01: 5210997-5217073 Setaria viridis
Sevir.1G055500 2.0kb upstream 2.0kb upstream 2000 false Chr_01: 5210997-5212996 Setaria viridis
Sevir.1G055500 2.0kb downstream 2.0kb downstream 6077 true Chr_01: 5212997-5219073 Setaria viridis
Sevir.1G055500 2.0kb downstream 2.0kb downstream 2000 false Chr_01: 5217074-5219073 Setaria viridis
Sevir.1G055500 5.0kb upstream 5.0kb upstream 9077 true Chr_01: 5207997-5217073 Setaria viridis
Sevir.1G055500 5.0kb upstream 5.0kb upstream 5000 false Chr_01: 5207997-5212996 Setaria viridis
Sevir.1G055500 5.0kb downstream 5.0kb downstream 9077 true Chr_01: 5212997-5222073 Setaria viridis
Sevir.1G055500 5.0kb downstream 5.0kb downstream 5000 false Chr_01: 5217074-5222073 Setaria viridis
Sevir.1G055500 10.0kb upstream 10.0kb upstream 14077 true Chr_01: 5202997-5217073 Setaria viridis
Sevir.1G055500 10.0kb upstream 10.0kb upstream 10000 false Chr_01: 5202997-5212996 Setaria viridis
Sevir.1G055500 10.0kb downstream 10.0kb downstream 14077 true Chr_01: 5212997-5227073 Setaria viridis
Sevir.1G055500 10.0kb downstream 10.0kb downstream 10000 false Chr_01: 5217074-5227073 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027025 5273 Angiosperm View MSA
122177029 5267 Panicoideae View MSA
124586891 5269 Grass View MSA
121296748 5274 Embryophyte View MSA
123334866 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain