Gene : Brara.A01043 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR12965 - VACUOLAR PROTEIN SORTING 54 Genomic Order:  1043
Name:  ? Brara.A01043 Secondary Identifier:  ? PAC:30636214
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A01043 0.5kb upstream 0.5kb upstream 7881 true A01: 5491762-5499642 Brassica rapa FPsc
Brara.A01043 0.5kb upstream 0.5kb upstream 500 false A01: 5491762-5492261 Brassica rapa FPsc
Brara.A01043 0.5kb downstream 0.5kb downstream 7881 true A01: 5492262-5500142 Brassica rapa FPsc
Brara.A01043 0.5kb downstream 0.5kb downstream 500 false A01: 5499643-5500142 Brassica rapa FPsc
Brara.A01043 1.0kb upstream 1.0kb upstream 8381 true A01: 5491262-5499642 Brassica rapa FPsc
Brara.A01043 1.0kb upstream 1.0kb upstream 1000 false A01: 5491262-5492261 Brassica rapa FPsc
Brara.A01043 1.0kb downstream 1.0kb downstream 8381 true A01: 5492262-5500642 Brassica rapa FPsc
Brara.A01043 1.0kb downstream 1.0kb downstream 1000 false A01: 5499643-5500642 Brassica rapa FPsc
Brara.A01043 2.0kb upstream 2.0kb upstream 9381 true A01: 5490262-5499642 Brassica rapa FPsc
Brara.A01043 2.0kb upstream 2.0kb upstream 2000 false A01: 5490262-5492261 Brassica rapa FPsc
Brara.A01043 2.0kb downstream 2.0kb downstream 9381 true A01: 5492262-5501642 Brassica rapa FPsc
Brara.A01043 2.0kb downstream 2.0kb downstream 2000 false A01: 5499643-5501642 Brassica rapa FPsc
Brara.A01043 5.0kb upstream 5.0kb upstream 12381 true A01: 5487262-5499642 Brassica rapa FPsc
Brara.A01043 5.0kb upstream 5.0kb upstream 5000 false A01: 5487262-5492261 Brassica rapa FPsc
Brara.A01043 5.0kb downstream 5.0kb downstream 12381 true A01: 5492262-5504642 Brassica rapa FPsc
Brara.A01043 5.0kb downstream 5.0kb downstream 5000 false A01: 5499643-5504642 Brassica rapa FPsc
Brara.A01043 10.0kb upstream 10.0kb upstream 17381 true A01: 5482262-5499642 Brassica rapa FPsc
Brara.A01043 10.0kb upstream 10.0kb upstream 10000 false A01: 5482262-5492261 Brassica rapa FPsc
Brara.A01043 10.0kb downstream 10.0kb downstream 17381 true A01: 5492262-5509642 Brassica rapa FPsc
Brara.A01043 10.0kb downstream 10.0kb downstream 10000 false A01: 5499643-5509642 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376446 5261 Brassicaceae View MSA
123828997 5264 Brassicales-Malvales View MSA
124345001 5266 SBM View MSA
124252809 5268 Malvidae View MSA
124068245 5270 Rosid View MSA
123740237 5271 Pentapetalae View MSA
122788545 5272 Eudicot View MSA
122042289 5273 Angiosperm View MSA
121346645 5274 Embryophyte View MSA
123425367 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier