Gene : Brara.A01388 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  1388
Name:  ? Brara.A01388 Secondary Identifier:  ? PAC:30638690
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A01388 0.5kb upstream 0.5kb upstream 3603 true A01: 7627815-7631417 Brassica rapa FPsc
Brara.A01388 0.5kb upstream 0.5kb upstream 500 false A01: 7630918-7631417 Brassica rapa FPsc
Brara.A01388 0.5kb downstream 0.5kb downstream 3603 true A01: 7627315-7630917 Brassica rapa FPsc
Brara.A01388 0.5kb downstream 0.5kb downstream 500 false A01: 7627315-7627814 Brassica rapa FPsc
Brara.A01388 1.0kb upstream 1.0kb upstream 4103 true A01: 7627815-7631917 Brassica rapa FPsc
Brara.A01388 1.0kb upstream 1.0kb upstream 1000 false A01: 7630918-7631917 Brassica rapa FPsc
Brara.A01388 1.0kb downstream 1.0kb downstream 4103 true A01: 7626815-7630917 Brassica rapa FPsc
Brara.A01388 1.0kb downstream 1.0kb downstream 1000 false A01: 7626815-7627814 Brassica rapa FPsc
Brara.A01388 2.0kb upstream 2.0kb upstream 5103 true A01: 7627815-7632917 Brassica rapa FPsc
Brara.A01388 2.0kb upstream 2.0kb upstream 2000 false A01: 7630918-7632917 Brassica rapa FPsc
Brara.A01388 2.0kb downstream 2.0kb downstream 5103 true A01: 7625815-7630917 Brassica rapa FPsc
Brara.A01388 2.0kb downstream 2.0kb downstream 2000 false A01: 7625815-7627814 Brassica rapa FPsc
Brara.A01388 5.0kb upstream 5.0kb upstream 8103 true A01: 7627815-7635917 Brassica rapa FPsc
Brara.A01388 5.0kb upstream 5.0kb upstream 5000 false A01: 7630918-7635917 Brassica rapa FPsc
Brara.A01388 5.0kb downstream 5.0kb downstream 8103 true A01: 7622815-7630917 Brassica rapa FPsc
Brara.A01388 5.0kb downstream 5.0kb downstream 5000 false A01: 7622815-7627814 Brassica rapa FPsc
Brara.A01388 10.0kb upstream 10.0kb upstream 13103 true A01: 7627815-7640917 Brassica rapa FPsc
Brara.A01388 10.0kb upstream 10.0kb upstream 10000 false A01: 7630918-7640917 Brassica rapa FPsc
Brara.A01388 10.0kb downstream 10.0kb downstream 13103 true A01: 7617815-7630917 Brassica rapa FPsc
Brara.A01388 10.0kb downstream 10.0kb downstream 10000 false A01: 7617815-7627814 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122352722 5261 Brassicaceae Singleton cluster - no MSA
123791415 5264 Brassicales-Malvales Singleton cluster - no MSA
124289329 5266 SBM Singleton cluster - no MSA
124142687 5268 Malvidae Singleton cluster - no MSA
123869522 5270 Rosid Singleton cluster - no MSA
123750748 5271 Pentapetalae View MSA
122786730 5272 Eudicot View MSA
122043550 5273 Angiosperm View MSA
121310146 5274 Embryophyte View MSA
123347715 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier