Gene : Brara.B00060 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR22763:SF20 - E3 LIGASE SHOOT GRAVITROPISM 9 Genomic Order:  60
Name:  ? Brara.B00060 Secondary Identifier:  ? PAC:30610293
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00060 0.5kb upstream 0.5kb upstream 1656 true A02: 348314-349969 Brassica rapa FPsc
Brara.B00060 0.5kb upstream 0.5kb upstream 500 false A02: 348314-348813 Brassica rapa FPsc
Brara.B00060 0.5kb downstream 0.5kb downstream 1656 true A02: 348814-350469 Brassica rapa FPsc
Brara.B00060 0.5kb downstream 0.5kb downstream 500 false A02: 349970-350469 Brassica rapa FPsc
Brara.B00060 1.0kb upstream 1.0kb upstream 2156 true A02: 347814-349969 Brassica rapa FPsc
Brara.B00060 1.0kb upstream 1.0kb upstream 1000 false A02: 347814-348813 Brassica rapa FPsc
Brara.B00060 1.0kb downstream 1.0kb downstream 2156 true A02: 348814-350969 Brassica rapa FPsc
Brara.B00060 1.0kb downstream 1.0kb downstream 1000 false A02: 349970-350969 Brassica rapa FPsc
Brara.B00060 2.0kb upstream 2.0kb upstream 3156 true A02: 346814-349969 Brassica rapa FPsc
Brara.B00060 2.0kb upstream 2.0kb upstream 2000 false A02: 346814-348813 Brassica rapa FPsc
Brara.B00060 2.0kb downstream 2.0kb downstream 3156 true A02: 348814-351969 Brassica rapa FPsc
Brara.B00060 2.0kb downstream 2.0kb downstream 2000 false A02: 349970-351969 Brassica rapa FPsc
Brara.B00060 5.0kb upstream 5.0kb upstream 6156 true A02: 343814-349969 Brassica rapa FPsc
Brara.B00060 5.0kb upstream 5.0kb upstream 5000 false A02: 343814-348813 Brassica rapa FPsc
Brara.B00060 5.0kb downstream 5.0kb downstream 6156 true A02: 348814-354969 Brassica rapa FPsc
Brara.B00060 5.0kb downstream 5.0kb downstream 5000 false A02: 349970-354969 Brassica rapa FPsc
Brara.B00060 10.0kb upstream 10.0kb upstream 11156 true A02: 338814-349969 Brassica rapa FPsc
Brara.B00060 10.0kb upstream 10.0kb upstream 10000 false A02: 338814-348813 Brassica rapa FPsc
Brara.B00060 10.0kb downstream 10.0kb downstream 11156 true A02: 348814-359969 Brassica rapa FPsc
Brara.B00060 10.0kb downstream 10.0kb downstream 10000 false A02: 349970-359969 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122345582 5261 Brassicaceae Singleton cluster - no MSA
123785411 5264 Brassicales-Malvales Singleton cluster - no MSA
124283553 5266 SBM Singleton cluster - no MSA
124137940 5268 Malvidae Singleton cluster - no MSA
124063596 5270 Rosid View MSA
123746607 5271 Pentapetalae View MSA
122791525 5272 Eudicot View MSA
122041904 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121309901 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier