Gene : Brara.C01693 B. rapa FPsc v1.3
Defline:  (1 of 17) 3.2.1.15//3.2.1.67 - Polygalacturonase / Pectinase // Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Genomic Order:  1693
Name:  ? Brara.C01693 Secondary Identifier:  ? PAC:30616495
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01693 0.5kb upstream 0.5kb upstream 2083 true A03: 8277548-8279630 Brassica rapa FPsc
Brara.C01693 0.5kb upstream 0.5kb upstream 500 false A03: 8277548-8278047 Brassica rapa FPsc
Brara.C01693 0.5kb downstream 0.5kb downstream 2083 true A03: 8278048-8280130 Brassica rapa FPsc
Brara.C01693 0.5kb downstream 0.5kb downstream 500 false A03: 8279631-8280130 Brassica rapa FPsc
Brara.C01693 1.0kb upstream 1.0kb upstream 2583 true A03: 8277048-8279630 Brassica rapa FPsc
Brara.C01693 1.0kb upstream 1.0kb upstream 1000 false A03: 8277048-8278047 Brassica rapa FPsc
Brara.C01693 1.0kb downstream 1.0kb downstream 2583 true A03: 8278048-8280630 Brassica rapa FPsc
Brara.C01693 1.0kb downstream 1.0kb downstream 1000 false A03: 8279631-8280630 Brassica rapa FPsc
Brara.C01693 2.0kb upstream 2.0kb upstream 3583 true A03: 8276048-8279630 Brassica rapa FPsc
Brara.C01693 2.0kb upstream 2.0kb upstream 2000 false A03: 8276048-8278047 Brassica rapa FPsc
Brara.C01693 2.0kb downstream 2.0kb downstream 3583 true A03: 8278048-8281630 Brassica rapa FPsc
Brara.C01693 2.0kb downstream 2.0kb downstream 2000 false A03: 8279631-8281630 Brassica rapa FPsc
Brara.C01693 5.0kb upstream 5.0kb upstream 6583 true A03: 8273048-8279630 Brassica rapa FPsc
Brara.C01693 5.0kb upstream 5.0kb upstream 5000 false A03: 8273048-8278047 Brassica rapa FPsc
Brara.C01693 5.0kb downstream 5.0kb downstream 6583 true A03: 8278048-8284630 Brassica rapa FPsc
Brara.C01693 5.0kb downstream 5.0kb downstream 5000 false A03: 8279631-8284630 Brassica rapa FPsc
Brara.C01693 10.0kb upstream 10.0kb upstream 11583 true A03: 8268048-8279630 Brassica rapa FPsc
Brara.C01693 10.0kb upstream 10.0kb upstream 10000 false A03: 8268048-8278047 Brassica rapa FPsc
Brara.C01693 10.0kb downstream 10.0kb downstream 11583 true A03: 8278048-8289630 Brassica rapa FPsc
Brara.C01693 10.0kb downstream 10.0kb downstream 10000 false A03: 8279631-8289630 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362883 5261 Brassicaceae View MSA
123837525 5264 Brassicales-Malvales View MSA
124337889 5266 SBM View MSA
124240129 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier