Gene : Brara.C02559 B. rapa FPsc v1.3
Defline:  (1 of 17) 3.2.1.15//3.2.1.67 - Polygalacturonase / Pectinase // Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Genomic Order:  2559
Name:  ? Brara.C02559 Secondary Identifier:  ? PAC:30618478
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C02559 0.5kb upstream 0.5kb upstream 2050 true A03: 12918324-12920373 Brassica rapa FPsc
Brara.C02559 0.5kb upstream 0.5kb upstream 500 false A03: 12919874-12920373 Brassica rapa FPsc
Brara.C02559 0.5kb downstream 0.5kb downstream 2050 true A03: 12917824-12919873 Brassica rapa FPsc
Brara.C02559 0.5kb downstream 0.5kb downstream 500 false A03: 12917824-12918323 Brassica rapa FPsc
Brara.C02559 1.0kb upstream 1.0kb upstream 2550 true A03: 12918324-12920873 Brassica rapa FPsc
Brara.C02559 1.0kb upstream 1.0kb upstream 1000 false A03: 12919874-12920873 Brassica rapa FPsc
Brara.C02559 1.0kb downstream 1.0kb downstream 2550 true A03: 12917324-12919873 Brassica rapa FPsc
Brara.C02559 1.0kb downstream 1.0kb downstream 1000 false A03: 12917324-12918323 Brassica rapa FPsc
Brara.C02559 2.0kb upstream 2.0kb upstream 3550 true A03: 12918324-12921873 Brassica rapa FPsc
Brara.C02559 2.0kb upstream 2.0kb upstream 2000 false A03: 12919874-12921873 Brassica rapa FPsc
Brara.C02559 2.0kb downstream 2.0kb downstream 3550 true A03: 12916324-12919873 Brassica rapa FPsc
Brara.C02559 2.0kb downstream 2.0kb downstream 2000 false A03: 12916324-12918323 Brassica rapa FPsc
Brara.C02559 5.0kb upstream 5.0kb upstream 6550 true A03: 12918324-12924873 Brassica rapa FPsc
Brara.C02559 5.0kb upstream 5.0kb upstream 5000 false A03: 12919874-12924873 Brassica rapa FPsc
Brara.C02559 5.0kb downstream 5.0kb downstream 6550 true A03: 12913324-12919873 Brassica rapa FPsc
Brara.C02559 5.0kb downstream 5.0kb downstream 5000 false A03: 12913324-12918323 Brassica rapa FPsc
Brara.C02559 10.0kb upstream 10.0kb upstream 11550 true A03: 12918324-12929873 Brassica rapa FPsc
Brara.C02559 10.0kb upstream 10.0kb upstream 10000 false A03: 12919874-12929873 Brassica rapa FPsc
Brara.C02559 10.0kb downstream 10.0kb downstream 11550 true A03: 12908324-12919873 Brassica rapa FPsc
Brara.C02559 10.0kb downstream 10.0kb downstream 10000 false A03: 12908324-12918323 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381128 5261 Brassicaceae View MSA
123837525 5264 Brassicales-Malvales View MSA
124337889 5266 SBM View MSA
124240129 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier