Gene : Brara.C02842 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2842
Name:  ? Brara.C02842 Secondary Identifier:  ? PAC:30616060
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C02842 0.5kb upstream 0.5kb upstream 2745 true A03: 14599638-14602382 Brassica rapa FPsc
Brara.C02842 0.5kb upstream 0.5kb upstream 500 false A03: 14601883-14602382 Brassica rapa FPsc
Brara.C02842 0.5kb downstream 0.5kb downstream 2745 true A03: 14599138-14601882 Brassica rapa FPsc
Brara.C02842 0.5kb downstream 0.5kb downstream 500 false A03: 14599138-14599637 Brassica rapa FPsc
Brara.C02842 1.0kb upstream 1.0kb upstream 3245 true A03: 14599638-14602882 Brassica rapa FPsc
Brara.C02842 1.0kb upstream 1.0kb upstream 1000 false A03: 14601883-14602882 Brassica rapa FPsc
Brara.C02842 1.0kb downstream 1.0kb downstream 3245 true A03: 14598638-14601882 Brassica rapa FPsc
Brara.C02842 1.0kb downstream 1.0kb downstream 1000 false A03: 14598638-14599637 Brassica rapa FPsc
Brara.C02842 2.0kb upstream 2.0kb upstream 4245 true A03: 14599638-14603882 Brassica rapa FPsc
Brara.C02842 2.0kb upstream 2.0kb upstream 2000 false A03: 14601883-14603882 Brassica rapa FPsc
Brara.C02842 2.0kb downstream 2.0kb downstream 4245 true A03: 14597638-14601882 Brassica rapa FPsc
Brara.C02842 2.0kb downstream 2.0kb downstream 2000 false A03: 14597638-14599637 Brassica rapa FPsc
Brara.C02842 5.0kb upstream 5.0kb upstream 7245 true A03: 14599638-14606882 Brassica rapa FPsc
Brara.C02842 5.0kb upstream 5.0kb upstream 5000 false A03: 14601883-14606882 Brassica rapa FPsc
Brara.C02842 5.0kb downstream 5.0kb downstream 7245 true A03: 14594638-14601882 Brassica rapa FPsc
Brara.C02842 5.0kb downstream 5.0kb downstream 5000 false A03: 14594638-14599637 Brassica rapa FPsc
Brara.C02842 10.0kb upstream 10.0kb upstream 12245 true A03: 14599638-14611882 Brassica rapa FPsc
Brara.C02842 10.0kb upstream 10.0kb upstream 10000 false A03: 14601883-14611882 Brassica rapa FPsc
Brara.C02842 10.0kb downstream 10.0kb downstream 12245 true A03: 14589638-14601882 Brassica rapa FPsc
Brara.C02842 10.0kb downstream 10.0kb downstream 10000 false A03: 14589638-14599637 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier