Gene : Brara.K01502 B. rapa FPsc v1.3

Defline:  (1 of 3) PTHR10966 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 Genomic Order:  31
Name:  ? Brara.K01502 Secondary Identifier:  ? PAC:30646890

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01502 0.5kb upstream 0.5kb upstream 1605 true Scaffold70077: 177490-179094 Brassica rapa FPsc
Brara.K01502 0.5kb upstream 0.5kb upstream 500 false Scaffold70077: 178595-179094 Brassica rapa FPsc
Brara.K01502 0.5kb downstream 0.5kb downstream 1605 true Scaffold70077: 176990-178594 Brassica rapa FPsc
Brara.K01502 0.5kb downstream 0.5kb downstream 500 false Scaffold70077: 176990-177489 Brassica rapa FPsc
Brara.K01502 1.0kb upstream 1.0kb upstream 2105 true Scaffold70077: 177490-179594 Brassica rapa FPsc
Brara.K01502 1.0kb upstream 1.0kb upstream 1000 false Scaffold70077: 178595-179594 Brassica rapa FPsc
Brara.K01502 1.0kb downstream 1.0kb downstream 2105 true Scaffold70077: 176490-178594 Brassica rapa FPsc
Brara.K01502 1.0kb downstream 1.0kb downstream 1000 false Scaffold70077: 176490-177489 Brassica rapa FPsc
Brara.K01502 2.0kb upstream 2.0kb upstream 3105 true Scaffold70077: 177490-180594 Brassica rapa FPsc
Brara.K01502 2.0kb upstream 2.0kb upstream 2000 false Scaffold70077: 178595-180594 Brassica rapa FPsc
Brara.K01502 2.0kb downstream 2.0kb downstream 3105 true Scaffold70077: 175490-178594 Brassica rapa FPsc
Brara.K01502 2.0kb downstream 2.0kb downstream 2000 false Scaffold70077: 175490-177489 Brassica rapa FPsc
Brara.K01502 5.0kb upstream 5.0kb upstream 6105 true Scaffold70077: 177490-183594 Brassica rapa FPsc
Brara.K01502 5.0kb upstream 5.0kb upstream 5000 false Scaffold70077: 178595-183594 Brassica rapa FPsc
Brara.K01502 5.0kb downstream 5.0kb downstream 6105 true Scaffold70077: 172490-178594 Brassica rapa FPsc
Brara.K01502 5.0kb downstream 5.0kb downstream 5000 false Scaffold70077: 172490-177489 Brassica rapa FPsc
Brara.K01502 10.0kb upstream 10.0kb upstream 11105 true Scaffold70077: 177490-188594 Brassica rapa FPsc
Brara.K01502 10.0kb upstream 10.0kb upstream 10000 false Scaffold70077: 178595-188594 Brassica rapa FPsc
Brara.K01502 10.0kb downstream 10.0kb downstream 11105 true Scaffold70077: 167490-178594 Brassica rapa FPsc
Brara.K01502 10.0kb downstream 10.0kb downstream 10000 false Scaffold70077: 167490-177489 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122354763 5261 Brassicaceae Singleton cluster - no MSA
123793107 5264 Brassicales-Malvales Singleton cluster - no MSA
124290960 5266 SBM Singleton cluster - no MSA
124143997 5268 Malvidae Singleton cluster - no MSA
123870604 5270 Rosid Singleton cluster - no MSA
123747373 5271 Pentapetalae View MSA
122787968 5272 Eudicot View MSA
122045425 5273 Angiosperm View MSA
121349813 5274 Embryophyte View MSA
123423825 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier