Gene : Brara.A00307 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR23063:SF2 - PROTEIN ACL-5, ISOFORM A Genomic Order:  307
Name:  ? Brara.A00307 Secondary Identifier:  ? PAC:30637400
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY0-1319 Brassica rapa FPsc pathologic  
BrapaFPsc PWY4FS-7 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7411 Brassica rapa FPsc pathologic  
BrapaFPsc TRIGLSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A00307 0.5kb upstream 0.5kb upstream 3297 true A01: 1590087-1593383 Brassica rapa FPsc
Brara.A00307 0.5kb upstream 0.5kb upstream 500 false A01: 1592884-1593383 Brassica rapa FPsc
Brara.A00307 0.5kb downstream 0.5kb downstream 3297 true A01: 1589587-1592883 Brassica rapa FPsc
Brara.A00307 0.5kb downstream 0.5kb downstream 500 false A01: 1589587-1590086 Brassica rapa FPsc
Brara.A00307 1.0kb upstream 1.0kb upstream 3797 true A01: 1590087-1593883 Brassica rapa FPsc
Brara.A00307 1.0kb upstream 1.0kb upstream 1000 false A01: 1592884-1593883 Brassica rapa FPsc
Brara.A00307 1.0kb downstream 1.0kb downstream 3797 true A01: 1589087-1592883 Brassica rapa FPsc
Brara.A00307 1.0kb downstream 1.0kb downstream 1000 false A01: 1589087-1590086 Brassica rapa FPsc
Brara.A00307 2.0kb upstream 2.0kb upstream 4797 true A01: 1590087-1594883 Brassica rapa FPsc
Brara.A00307 2.0kb upstream 2.0kb upstream 2000 false A01: 1592884-1594883 Brassica rapa FPsc
Brara.A00307 2.0kb downstream 2.0kb downstream 4797 true A01: 1588087-1592883 Brassica rapa FPsc
Brara.A00307 2.0kb downstream 2.0kb downstream 2000 false A01: 1588087-1590086 Brassica rapa FPsc
Brara.A00307 5.0kb upstream 5.0kb upstream 7797 true A01: 1590087-1597883 Brassica rapa FPsc
Brara.A00307 5.0kb upstream 5.0kb upstream 5000 false A01: 1592884-1597883 Brassica rapa FPsc
Brara.A00307 5.0kb downstream 5.0kb downstream 7797 true A01: 1585087-1592883 Brassica rapa FPsc
Brara.A00307 5.0kb downstream 5.0kb downstream 5000 false A01: 1585087-1590086 Brassica rapa FPsc
Brara.A00307 10.0kb upstream 10.0kb upstream 12797 true A01: 1590087-1602883 Brassica rapa FPsc
Brara.A00307 10.0kb upstream 10.0kb upstream 10000 false A01: 1592884-1602883 Brassica rapa FPsc
Brara.A00307 10.0kb downstream 10.0kb downstream 12797 true A01: 1580087-1592883 Brassica rapa FPsc
Brara.A00307 10.0kb downstream 10.0kb downstream 10000 false A01: 1580087-1590086 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372849 5261 Brassicaceae View MSA
123831200 5264 Brassicales-Malvales View MSA
124336652 5266 SBM View MSA
124240700 5268 Malvidae View MSA
124065139 5270 Rosid View MSA
123751222 5271 Pentapetalae View MSA
122796143 5272 Eudicot View MSA
122045469 5273 Angiosperm View MSA
121344945 5274 Embryophyte View MSA
123427569 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier