Gene : Bostr.27895s0116 B. stricta v1.2
Defline:  (1 of 1) PTHR12313:SF12 - RING ZINC FINGER PROTEIN-RELATED Genomic Order:  116
Name:  ? Bostr.27895s0116 Secondary Identifier:  ? PAC:30650515
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-7511 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.27895s0116 0.5kb upstream 0.5kb upstream 1866 true Scaffold27895: 1072730-1074595 Boechera stricta
Bostr.27895s0116 0.5kb upstream 0.5kb upstream 500 false Scaffold27895: 1072730-1073229 Boechera stricta
Bostr.27895s0116 0.5kb downstream 0.5kb downstream 1866 true Scaffold27895: 1073230-1075095 Boechera stricta
Bostr.27895s0116 0.5kb downstream 0.5kb downstream 500 false Scaffold27895: 1074596-1075095 Boechera stricta
Bostr.27895s0116 1.0kb upstream 1.0kb upstream 2366 true Scaffold27895: 1072230-1074595 Boechera stricta
Bostr.27895s0116 1.0kb upstream 1.0kb upstream 1000 false Scaffold27895: 1072230-1073229 Boechera stricta
Bostr.27895s0116 1.0kb downstream 1.0kb downstream 2366 true Scaffold27895: 1073230-1075595 Boechera stricta
Bostr.27895s0116 1.0kb downstream 1.0kb downstream 1000 false Scaffold27895: 1074596-1075595 Boechera stricta
Bostr.27895s0116 2.0kb upstream 2.0kb upstream 3366 true Scaffold27895: 1071230-1074595 Boechera stricta
Bostr.27895s0116 2.0kb upstream 2.0kb upstream 2000 false Scaffold27895: 1071230-1073229 Boechera stricta
Bostr.27895s0116 2.0kb downstream 2.0kb downstream 3366 true Scaffold27895: 1073230-1076595 Boechera stricta
Bostr.27895s0116 2.0kb downstream 2.0kb downstream 2000 false Scaffold27895: 1074596-1076595 Boechera stricta
Bostr.27895s0116 5.0kb upstream 5.0kb upstream 6366 true Scaffold27895: 1068230-1074595 Boechera stricta
Bostr.27895s0116 5.0kb upstream 5.0kb upstream 5000 false Scaffold27895: 1068230-1073229 Boechera stricta
Bostr.27895s0116 5.0kb downstream 5.0kb downstream 6366 true Scaffold27895: 1073230-1079595 Boechera stricta
Bostr.27895s0116 5.0kb downstream 5.0kb downstream 5000 false Scaffold27895: 1074596-1079595 Boechera stricta
Bostr.27895s0116 10.0kb upstream 10.0kb upstream 11366 true Scaffold27895: 1063230-1074595 Boechera stricta
Bostr.27895s0116 10.0kb upstream 10.0kb upstream 10000 false Scaffold27895: 1063230-1073229 Boechera stricta
Bostr.27895s0116 10.0kb downstream 10.0kb downstream 11366 true Scaffold27895: 1073230-1084595 Boechera stricta
Bostr.27895s0116 10.0kb downstream 10.0kb downstream 10000 false Scaffold27895: 1074596-1084595 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363032 5261 Brassicaceae View MSA
123827533 5264 Brassicales-Malvales View MSA
124340698 5266 SBM View MSA
124252660 5268 Malvidae View MSA
124066658 5270 Rosid View MSA
123750017 5271 Pentapetalae View MSA
122793132 5272 Eudicot View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain