Gene : Bostr.7867s1325 B. stricta v1.2
Defline:  (1 of 2) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  1325
Name:  ? Bostr.7867s1325 Secondary Identifier:  ? PAC:30658636
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-2541 Boechera stricta pathologic  
Bstricta PWY-5670 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.7867s1325 0.5kb upstream 0.5kb upstream 4265 true Scaffold7867: 6732877-6737141 Boechera stricta
Bostr.7867s1325 0.5kb upstream 0.5kb upstream 500 false Scaffold7867: 6732877-6733376 Boechera stricta
Bostr.7867s1325 0.5kb downstream 0.5kb downstream 4265 true Scaffold7867: 6733377-6737641 Boechera stricta
Bostr.7867s1325 0.5kb downstream 0.5kb downstream 500 false Scaffold7867: 6737142-6737641 Boechera stricta
Bostr.7867s1325 1.0kb upstream 1.0kb upstream 4765 true Scaffold7867: 6732377-6737141 Boechera stricta
Bostr.7867s1325 1.0kb upstream 1.0kb upstream 1000 false Scaffold7867: 6732377-6733376 Boechera stricta
Bostr.7867s1325 1.0kb downstream 1.0kb downstream 4765 true Scaffold7867: 6733377-6738141 Boechera stricta
Bostr.7867s1325 1.0kb downstream 1.0kb downstream 1000 false Scaffold7867: 6737142-6738141 Boechera stricta
Bostr.7867s1325 2.0kb upstream 2.0kb upstream 5765 true Scaffold7867: 6731377-6737141 Boechera stricta
Bostr.7867s1325 2.0kb upstream 2.0kb upstream 2000 false Scaffold7867: 6731377-6733376 Boechera stricta
Bostr.7867s1325 2.0kb downstream 2.0kb downstream 5765 true Scaffold7867: 6733377-6739141 Boechera stricta
Bostr.7867s1325 2.0kb downstream 2.0kb downstream 2000 false Scaffold7867: 6737142-6739141 Boechera stricta
Bostr.7867s1325 5.0kb upstream 5.0kb upstream 8765 true Scaffold7867: 6728377-6737141 Boechera stricta
Bostr.7867s1325 5.0kb upstream 5.0kb upstream 5000 false Scaffold7867: 6728377-6733376 Boechera stricta
Bostr.7867s1325 5.0kb downstream 5.0kb downstream 8765 true Scaffold7867: 6733377-6742141 Boechera stricta
Bostr.7867s1325 5.0kb downstream 5.0kb downstream 5000 false Scaffold7867: 6737142-6742141 Boechera stricta
Bostr.7867s1325 10.0kb upstream 10.0kb upstream 13765 true Scaffold7867: 6723377-6737141 Boechera stricta
Bostr.7867s1325 10.0kb upstream 10.0kb upstream 10000 false Scaffold7867: 6723377-6733376 Boechera stricta
Bostr.7867s1325 10.0kb downstream 10.0kb downstream 13765 true Scaffold7867: 6733377-6747141 Boechera stricta
Bostr.7867s1325 10.0kb downstream 10.0kb downstream 10000 false Scaffold7867: 6737142-6747141 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363626 5261 Brassicaceae View MSA
123827932 5264 Brassicales-Malvales View MSA
124340465 5266 SBM View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain