Gene : Cucsa.034750 C. sativus v1.0
Defline:  (1 of 2) PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) Genomic Order:  38
Name:  ? Cucsa.034750 Secondary Identifier:  ? PAC:16952641
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.034750 0.5kb upstream 0.5kb upstream 3547 true scaffold00444: 637131-640677 Cucumis sativus
Cucsa.034750 0.5kb upstream 0.5kb upstream 500 false scaffold00444: 637131-637630 Cucumis sativus
Cucsa.034750 0.5kb downstream 0.5kb downstream 3547 true scaffold00444: 637631-641177 Cucumis sativus
Cucsa.034750 0.5kb downstream 0.5kb downstream 500 false scaffold00444: 640678-641177 Cucumis sativus
Cucsa.034750 1.0kb upstream 1.0kb upstream 4047 true scaffold00444: 636631-640677 Cucumis sativus
Cucsa.034750 1.0kb upstream 1.0kb upstream 1000 false scaffold00444: 636631-637630 Cucumis sativus
Cucsa.034750 1.0kb downstream 1.0kb downstream 4047 true scaffold00444: 637631-641677 Cucumis sativus
Cucsa.034750 1.0kb downstream 1.0kb downstream 1000 false scaffold00444: 640678-641677 Cucumis sativus
Cucsa.034750 2.0kb upstream 2.0kb upstream 5047 true scaffold00444: 635631-640677 Cucumis sativus
Cucsa.034750 2.0kb upstream 2.0kb upstream 2000 false scaffold00444: 635631-637630 Cucumis sativus
Cucsa.034750 2.0kb downstream 2.0kb downstream 5047 true scaffold00444: 637631-642677 Cucumis sativus
Cucsa.034750 2.0kb downstream 2.0kb downstream 2000 false scaffold00444: 640678-642677 Cucumis sativus
Cucsa.034750 5.0kb upstream 5.0kb upstream 8047 true scaffold00444: 632631-640677 Cucumis sativus
Cucsa.034750 5.0kb upstream 5.0kb upstream 5000 false scaffold00444: 632631-637630 Cucumis sativus
Cucsa.034750 5.0kb downstream 5.0kb downstream 8047 true scaffold00444: 637631-645677 Cucumis sativus
Cucsa.034750 5.0kb downstream 5.0kb downstream 5000 false scaffold00444: 640678-645677 Cucumis sativus
Cucsa.034750 10.0kb upstream 10.0kb upstream 13047 true scaffold00444: 627631-640677 Cucumis sativus
Cucsa.034750 10.0kb upstream 10.0kb upstream 10000 false scaffold00444: 627631-637630 Cucumis sativus
Cucsa.034750 10.0kb downstream 10.0kb downstream 13047 true scaffold00444: 637631-650677 Cucumis sativus
Cucsa.034750 10.0kb downstream 10.0kb downstream 10000 false scaffold00444: 640678-650677 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121606514 5273 Angiosperm View MSA
122236784 5265 Fabidae View MSA
123982994 5270 Rosid View MSA
123558668 5271 Pentapetalae View MSA
122593482 5272 Eudicot View MSA
120878804 5274 Embryophyte View MSA
122919693 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain