Gene : Cucsa.163250 C. sativus v1.0
Defline:  (1 of 1) PF00665//PF08284 - Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) Genomic Order:  357
Name:  ? Cucsa.163250 Secondary Identifier:  ? PAC:16965798
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.163250 0.5kb upstream 0.5kb upstream 3062 true scaffold01144: 2652448-2655509 Cucumis sativus
Cucsa.163250 0.5kb upstream 0.5kb upstream 500 false scaffold01144: 2652448-2652947 Cucumis sativus
Cucsa.163250 0.5kb downstream 0.5kb downstream 3062 true scaffold01144: 2652948-2656009 Cucumis sativus
Cucsa.163250 0.5kb downstream 0.5kb downstream 500 false scaffold01144: 2655510-2656009 Cucumis sativus
Cucsa.163250 1.0kb upstream 1.0kb upstream 3562 true scaffold01144: 2651948-2655509 Cucumis sativus
Cucsa.163250 1.0kb upstream 1.0kb upstream 1000 false scaffold01144: 2651948-2652947 Cucumis sativus
Cucsa.163250 1.0kb downstream 1.0kb downstream 3562 true scaffold01144: 2652948-2656509 Cucumis sativus
Cucsa.163250 1.0kb downstream 1.0kb downstream 1000 false scaffold01144: 2655510-2656509 Cucumis sativus
Cucsa.163250 2.0kb upstream 2.0kb upstream 4562 true scaffold01144: 2650948-2655509 Cucumis sativus
Cucsa.163250 2.0kb upstream 2.0kb upstream 2000 false scaffold01144: 2650948-2652947 Cucumis sativus
Cucsa.163250 2.0kb downstream 2.0kb downstream 4562 true scaffold01144: 2652948-2657509 Cucumis sativus
Cucsa.163250 2.0kb downstream 2.0kb downstream 2000 false scaffold01144: 2655510-2657509 Cucumis sativus
Cucsa.163250 5.0kb upstream 5.0kb upstream 7562 true scaffold01144: 2647948-2655509 Cucumis sativus
Cucsa.163250 5.0kb upstream 5.0kb upstream 5000 false scaffold01144: 2647948-2652947 Cucumis sativus
Cucsa.163250 5.0kb downstream 5.0kb downstream 7562 true scaffold01144: 2652948-2660509 Cucumis sativus
Cucsa.163250 5.0kb downstream 5.0kb downstream 5000 false scaffold01144: 2655510-2660509 Cucumis sativus
Cucsa.163250 10.0kb upstream 10.0kb upstream 12562 true scaffold01144: 2642948-2655509 Cucumis sativus
Cucsa.163250 10.0kb upstream 10.0kb upstream 10000 false scaffold01144: 2642948-2652947 Cucumis sativus
Cucsa.163250 10.0kb downstream 10.0kb downstream 12562 true scaffold01144: 2652948-2665509 Cucumis sativus
Cucsa.163250 10.0kb downstream 10.0kb downstream 10000 false scaffold01144: 2655510-2665509 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121606514 5273 Angiosperm View MSA
122236784 5265 Fabidae View MSA
123982994 5270 Rosid View MSA
123558668 5271 Pentapetalae View MSA
122593482 5272 Eudicot View MSA
120878804 5274 Embryophyte View MSA
122919693 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain