Gene : Medtr1g017520 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Description:  pre-mRNA-processing 40A-like protein
Genomic Order:  630 Name:  ? Medtr1g017520
Secondary Identifier:  ? PAC:31093177
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g017520 0.5kb upstream 0.5kb upstream 17281 true chr1: 4918614-4935894 Medicago truncatula
Medtr1g017520 0.5kb upstream 0.5kb upstream 500 false chr1: 4918614-4919113 Medicago truncatula
Medtr1g017520 0.5kb downstream 0.5kb downstream 17281 true chr1: 4919114-4936394 Medicago truncatula
Medtr1g017520 0.5kb downstream 0.5kb downstream 500 false chr1: 4935895-4936394 Medicago truncatula
Medtr1g017520 1.0kb upstream 1.0kb upstream 17781 true chr1: 4918114-4935894 Medicago truncatula
Medtr1g017520 1.0kb upstream 1.0kb upstream 1000 false chr1: 4918114-4919113 Medicago truncatula
Medtr1g017520 1.0kb downstream 1.0kb downstream 17781 true chr1: 4919114-4936894 Medicago truncatula
Medtr1g017520 1.0kb downstream 1.0kb downstream 1000 false chr1: 4935895-4936894 Medicago truncatula
Medtr1g017520 2.0kb upstream 2.0kb upstream 18781 true chr1: 4917114-4935894 Medicago truncatula
Medtr1g017520 2.0kb upstream 2.0kb upstream 2000 false chr1: 4917114-4919113 Medicago truncatula
Medtr1g017520 2.0kb downstream 2.0kb downstream 18781 true chr1: 4919114-4937894 Medicago truncatula
Medtr1g017520 2.0kb downstream 2.0kb downstream 2000 false chr1: 4935895-4937894 Medicago truncatula
Medtr1g017520 5.0kb upstream 5.0kb upstream 21781 true chr1: 4914114-4935894 Medicago truncatula
Medtr1g017520 5.0kb upstream 5.0kb upstream 5000 false chr1: 4914114-4919113 Medicago truncatula
Medtr1g017520 5.0kb downstream 5.0kb downstream 21781 true chr1: 4919114-4940894 Medicago truncatula
Medtr1g017520 5.0kb downstream 5.0kb downstream 5000 false chr1: 4935895-4940894 Medicago truncatula
Medtr1g017520 10.0kb upstream 10.0kb upstream 26781 true chr1: 4909114-4935894 Medicago truncatula
Medtr1g017520 10.0kb upstream 10.0kb upstream 10000 false chr1: 4909114-4919113 Medicago truncatula
Medtr1g017520 10.0kb downstream 10.0kb downstream 26781 true chr1: 4919114-4945894 Medicago truncatula
Medtr1g017520 10.0kb downstream 10.0kb downstream 10000 false chr1: 4935895-4945894 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303308 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.492        
cufflinks 5.168        
cufflinks 6.146        
cufflinks 0.704       Low
cufflinks 6.328        
cufflinks 0.983       Low
cufflinks 1.806        
cufflinks 5.472        
cufflinks 1.148        

0 Strain