Gene : Medtr1g088160 M. truncatula Mt4.0v1
Defline:  (1 of 1) 3.2.1.67 - Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Description:  polygalacturonase
Genomic Order:  4855 Name:  ? Medtr1g088160
Secondary Identifier:  ? PAC:31094955
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g088160 0.5kb upstream 0.5kb upstream 2310 true chr1: 39390473-39392782 Medicago truncatula
Medtr1g088160 0.5kb upstream 0.5kb upstream 500 false chr1: 39392283-39392782 Medicago truncatula
Medtr1g088160 0.5kb downstream 0.5kb downstream 2310 true chr1: 39389973-39392282 Medicago truncatula
Medtr1g088160 0.5kb downstream 0.5kb downstream 500 false chr1: 39389973-39390472 Medicago truncatula
Medtr1g088160 1.0kb upstream 1.0kb upstream 2810 true chr1: 39390473-39393282 Medicago truncatula
Medtr1g088160 1.0kb upstream 1.0kb upstream 1000 false chr1: 39392283-39393282 Medicago truncatula
Medtr1g088160 1.0kb downstream 1.0kb downstream 2810 true chr1: 39389473-39392282 Medicago truncatula
Medtr1g088160 1.0kb downstream 1.0kb downstream 1000 false chr1: 39389473-39390472 Medicago truncatula
Medtr1g088160 2.0kb upstream 2.0kb upstream 3810 true chr1: 39390473-39394282 Medicago truncatula
Medtr1g088160 2.0kb upstream 2.0kb upstream 2000 false chr1: 39392283-39394282 Medicago truncatula
Medtr1g088160 2.0kb downstream 2.0kb downstream 3810 true chr1: 39388473-39392282 Medicago truncatula
Medtr1g088160 2.0kb downstream 2.0kb downstream 2000 false chr1: 39388473-39390472 Medicago truncatula
Medtr1g088160 5.0kb upstream 5.0kb upstream 6810 true chr1: 39390473-39397282 Medicago truncatula
Medtr1g088160 5.0kb upstream 5.0kb upstream 5000 false chr1: 39392283-39397282 Medicago truncatula
Medtr1g088160 5.0kb downstream 5.0kb downstream 6810 true chr1: 39385473-39392282 Medicago truncatula
Medtr1g088160 5.0kb downstream 5.0kb downstream 5000 false chr1: 39385473-39390472 Medicago truncatula
Medtr1g088160 10.0kb upstream 10.0kb upstream 11810 true chr1: 39390473-39402282 Medicago truncatula
Medtr1g088160 10.0kb upstream 10.0kb upstream 10000 false chr1: 39392283-39402282 Medicago truncatula
Medtr1g088160 10.0kb downstream 10.0kb downstream 11810 true chr1: 39380473-39392282 Medicago truncatula
Medtr1g088160 10.0kb downstream 10.0kb downstream 10000 false chr1: 39380473-39390472 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309648 5265 Fabidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain