Gene : Medtr1g106025 M. truncatula Mt4.0v1

Defline:  (1 of 1) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 Description:  pre-mRNA-processing 40A-like protein
Genomic Order:  6016 Name:  ? Medtr1g106025
Secondary Identifier:  ? PAC:31098958

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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g106025 0.5kb upstream 0.5kb upstream 13934 true chr1: 47946365-47960298 Medicago truncatula
Medtr1g106025 0.5kb upstream 0.5kb upstream 500 false chr1: 47946365-47946864 Medicago truncatula
Medtr1g106025 0.5kb downstream 0.5kb downstream 13934 true chr1: 47946865-47960798 Medicago truncatula
Medtr1g106025 0.5kb downstream 0.5kb downstream 500 false chr1: 47960299-47960798 Medicago truncatula
Medtr1g106025 1.0kb upstream 1.0kb upstream 14434 true chr1: 47945865-47960298 Medicago truncatula
Medtr1g106025 1.0kb upstream 1.0kb upstream 1000 false chr1: 47945865-47946864 Medicago truncatula
Medtr1g106025 1.0kb downstream 1.0kb downstream 14434 true chr1: 47946865-47961298 Medicago truncatula
Medtr1g106025 1.0kb downstream 1.0kb downstream 1000 false chr1: 47960299-47961298 Medicago truncatula
Medtr1g106025 2.0kb upstream 2.0kb upstream 15434 true chr1: 47944865-47960298 Medicago truncatula
Medtr1g106025 2.0kb upstream 2.0kb upstream 2000 false chr1: 47944865-47946864 Medicago truncatula
Medtr1g106025 2.0kb downstream 2.0kb downstream 15434 true chr1: 47946865-47962298 Medicago truncatula
Medtr1g106025 2.0kb downstream 2.0kb downstream 2000 false chr1: 47960299-47962298 Medicago truncatula
Medtr1g106025 5.0kb upstream 5.0kb upstream 18434 true chr1: 47941865-47960298 Medicago truncatula
Medtr1g106025 5.0kb upstream 5.0kb upstream 5000 false chr1: 47941865-47946864 Medicago truncatula
Medtr1g106025 5.0kb downstream 5.0kb downstream 18434 true chr1: 47946865-47965298 Medicago truncatula
Medtr1g106025 5.0kb downstream 5.0kb downstream 5000 false chr1: 47960299-47965298 Medicago truncatula
Medtr1g106025 10.0kb upstream 10.0kb upstream 23434 true chr1: 47936865-47960298 Medicago truncatula
Medtr1g106025 10.0kb upstream 10.0kb upstream 10000 false chr1: 47936865-47946864 Medicago truncatula
Medtr1g106025 10.0kb downstream 10.0kb downstream 23434 true chr1: 47946865-47970298 Medicago truncatula
Medtr1g106025 10.0kb downstream 10.0kb downstream 10000 false chr1: 47960299-47970298 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306677 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.947        
cufflinks 2.015        
cufflinks 1.945        
cufflinks 0.692       Low
cufflinks 2.546       High
cufflinks 0.512       Low
cufflinks 1.278        
cufflinks 1.947        
cufflinks 1.02        

0 Strain