Gene : Medtr2g013550 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR12313//PTHR12313:SF6 - RNF5 Description:  E3 ubiquitin-protein ligase RMA1H1-like protein
Genomic Order:  550 Name:  ? Medtr2g013550
Secondary Identifier:  ? PAC:31065963
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g013550 0.5kb upstream 0.5kb upstream 2640 true chr2: 3662157-3664796 Medicago truncatula
Medtr2g013550 0.5kb upstream 0.5kb upstream 500 false chr2: 3664297-3664796 Medicago truncatula
Medtr2g013550 0.5kb downstream 0.5kb downstream 2640 true chr2: 3661657-3664296 Medicago truncatula
Medtr2g013550 0.5kb downstream 0.5kb downstream 500 false chr2: 3661657-3662156 Medicago truncatula
Medtr2g013550 1.0kb upstream 1.0kb upstream 3140 true chr2: 3662157-3665296 Medicago truncatula
Medtr2g013550 1.0kb upstream 1.0kb upstream 1000 false chr2: 3664297-3665296 Medicago truncatula
Medtr2g013550 1.0kb downstream 1.0kb downstream 3140 true chr2: 3661157-3664296 Medicago truncatula
Medtr2g013550 1.0kb downstream 1.0kb downstream 1000 false chr2: 3661157-3662156 Medicago truncatula
Medtr2g013550 2.0kb upstream 2.0kb upstream 4140 true chr2: 3662157-3666296 Medicago truncatula
Medtr2g013550 2.0kb upstream 2.0kb upstream 2000 false chr2: 3664297-3666296 Medicago truncatula
Medtr2g013550 2.0kb downstream 2.0kb downstream 4140 true chr2: 3660157-3664296 Medicago truncatula
Medtr2g013550 2.0kb downstream 2.0kb downstream 2000 false chr2: 3660157-3662156 Medicago truncatula
Medtr2g013550 5.0kb upstream 5.0kb upstream 7140 true chr2: 3662157-3669296 Medicago truncatula
Medtr2g013550 5.0kb upstream 5.0kb upstream 5000 false chr2: 3664297-3669296 Medicago truncatula
Medtr2g013550 5.0kb downstream 5.0kb downstream 7140 true chr2: 3657157-3664296 Medicago truncatula
Medtr2g013550 5.0kb downstream 5.0kb downstream 5000 false chr2: 3657157-3662156 Medicago truncatula
Medtr2g013550 10.0kb upstream 10.0kb upstream 12140 true chr2: 3662157-3674296 Medicago truncatula
Medtr2g013550 10.0kb upstream 10.0kb upstream 10000 false chr2: 3664297-3674296 Medicago truncatula
Medtr2g013550 10.0kb downstream 10.0kb downstream 12140 true chr2: 3652157-3664296 Medicago truncatula
Medtr2g013550 10.0kb downstream 10.0kb downstream 10000 false chr2: 3652157-3662156 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309912 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.472        
cufflinks 6.142        
cufflinks 10.371     High High
cufflinks 9.192     High  
cufflinks 6.035        
cufflinks 4.303       Low
cufflinks 7.73        
cufflinks 11.472     High High
cufflinks 8.43        

0 Strain