Gene : Medtr2g087350 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22849//PTHR22849:SF11 - WDSAM1 PROTEIN Description:  E3 ubiquitin-protein ligase PUB22-like protein
Genomic Order:  4620 Name:  ? Medtr2g087350
Secondary Identifier:  ? PAC:31062923
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g087350 0.5kb upstream 0.5kb upstream 2234 true chr2: 36743285-36745518 Medicago truncatula
Medtr2g087350 0.5kb upstream 0.5kb upstream 500 false chr2: 36745019-36745518 Medicago truncatula
Medtr2g087350 0.5kb downstream 0.5kb downstream 2234 true chr2: 36742785-36745018 Medicago truncatula
Medtr2g087350 0.5kb downstream 0.5kb downstream 500 false chr2: 36742785-36743284 Medicago truncatula
Medtr2g087350 1.0kb upstream 1.0kb upstream 2734 true chr2: 36743285-36746018 Medicago truncatula
Medtr2g087350 1.0kb upstream 1.0kb upstream 1000 false chr2: 36745019-36746018 Medicago truncatula
Medtr2g087350 1.0kb downstream 1.0kb downstream 2734 true chr2: 36742285-36745018 Medicago truncatula
Medtr2g087350 1.0kb downstream 1.0kb downstream 1000 false chr2: 36742285-36743284 Medicago truncatula
Medtr2g087350 2.0kb upstream 2.0kb upstream 3734 true chr2: 36743285-36747018 Medicago truncatula
Medtr2g087350 2.0kb upstream 2.0kb upstream 2000 false chr2: 36745019-36747018 Medicago truncatula
Medtr2g087350 2.0kb downstream 2.0kb downstream 3734 true chr2: 36741285-36745018 Medicago truncatula
Medtr2g087350 2.0kb downstream 2.0kb downstream 2000 false chr2: 36741285-36743284 Medicago truncatula
Medtr2g087350 5.0kb upstream 5.0kb upstream 6734 true chr2: 36743285-36750018 Medicago truncatula
Medtr2g087350 5.0kb upstream 5.0kb upstream 5000 false chr2: 36745019-36750018 Medicago truncatula
Medtr2g087350 5.0kb downstream 5.0kb downstream 6734 true chr2: 36738285-36745018 Medicago truncatula
Medtr2g087350 5.0kb downstream 5.0kb downstream 5000 false chr2: 36738285-36743284 Medicago truncatula
Medtr2g087350 10.0kb upstream 10.0kb upstream 11734 true chr2: 36743285-36755018 Medicago truncatula
Medtr2g087350 10.0kb upstream 10.0kb upstream 10000 false chr2: 36745019-36755018 Medicago truncatula
Medtr2g087350 10.0kb downstream 10.0kb downstream 11734 true chr2: 36733285-36745018 Medicago truncatula
Medtr2g087350 10.0kb downstream 10.0kb downstream 10000 false chr2: 36733285-36743284 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303042 5265 Fabidae View MSA
124070455 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.288       Low
cufflinks 0.876        
cufflinks 0.994        
cufflinks 0.851        
cufflinks 0.878        
cufflinks 2.84       High
cufflinks 2.344       High
cufflinks 0.714        
cufflinks 2.037        

0 Strain