Gene : Medtr2g090295 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR12313//PTHR12313:SF5 - RNF5 Description:  E3 ubiquitin-protein ligase RMA1H1-like protein
Genomic Order:  4857 Name:  ? Medtr2g090295
Secondary Identifier:  ? PAC:31062439
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g090295 0.5kb upstream 0.5kb upstream 3378 true chr2: 38393419-38396796 Medicago truncatula
Medtr2g090295 0.5kb upstream 0.5kb upstream 500 false chr2: 38396297-38396796 Medicago truncatula
Medtr2g090295 0.5kb downstream 0.5kb downstream 3378 true chr2: 38392919-38396296 Medicago truncatula
Medtr2g090295 0.5kb downstream 0.5kb downstream 500 false chr2: 38392919-38393418 Medicago truncatula
Medtr2g090295 1.0kb upstream 1.0kb upstream 3878 true chr2: 38393419-38397296 Medicago truncatula
Medtr2g090295 1.0kb upstream 1.0kb upstream 1000 false chr2: 38396297-38397296 Medicago truncatula
Medtr2g090295 1.0kb downstream 1.0kb downstream 3878 true chr2: 38392419-38396296 Medicago truncatula
Medtr2g090295 1.0kb downstream 1.0kb downstream 1000 false chr2: 38392419-38393418 Medicago truncatula
Medtr2g090295 2.0kb upstream 2.0kb upstream 4878 true chr2: 38393419-38398296 Medicago truncatula
Medtr2g090295 2.0kb upstream 2.0kb upstream 2000 false chr2: 38396297-38398296 Medicago truncatula
Medtr2g090295 2.0kb downstream 2.0kb downstream 4878 true chr2: 38391419-38396296 Medicago truncatula
Medtr2g090295 2.0kb downstream 2.0kb downstream 2000 false chr2: 38391419-38393418 Medicago truncatula
Medtr2g090295 5.0kb upstream 5.0kb upstream 7878 true chr2: 38393419-38401296 Medicago truncatula
Medtr2g090295 5.0kb upstream 5.0kb upstream 5000 false chr2: 38396297-38401296 Medicago truncatula
Medtr2g090295 5.0kb downstream 5.0kb downstream 7878 true chr2: 38388419-38396296 Medicago truncatula
Medtr2g090295 5.0kb downstream 5.0kb downstream 5000 false chr2: 38388419-38393418 Medicago truncatula
Medtr2g090295 10.0kb upstream 10.0kb upstream 12878 true chr2: 38393419-38406296 Medicago truncatula
Medtr2g090295 10.0kb upstream 10.0kb upstream 10000 false chr2: 38396297-38406296 Medicago truncatula
Medtr2g090295 10.0kb downstream 10.0kb downstream 12878 true chr2: 38383419-38396296 Medicago truncatula
Medtr2g090295 10.0kb downstream 10.0kb downstream 10000 false chr2: 38383419-38393418 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308246 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.714     High High
cufflinks 7.042        
cufflinks 7.42        
cufflinks 29.495     High  
cufflinks 7.439        
cufflinks 12.227     High  
cufflinks 22.059     High  
cufflinks 7.66        
cufflinks 34.952     High High

0 Strain