Gene : Medtr2g066840 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR11390:SF27 - DNA TOPOISOMERASE Description:  DNA topoisomerase I
Genomic Order:  3526 Name:  ? Medtr2g066840
Secondary Identifier:  ? PAC:31064956
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g066840 0.5kb upstream 0.5kb upstream 2697 true chr2: 27945165-27947861 Medicago truncatula
Medtr2g066840 0.5kb upstream 0.5kb upstream 500 false chr2: 27947362-27947861 Medicago truncatula
Medtr2g066840 0.5kb downstream 0.5kb downstream 2697 true chr2: 27944665-27947361 Medicago truncatula
Medtr2g066840 0.5kb downstream 0.5kb downstream 500 false chr2: 27944665-27945164 Medicago truncatula
Medtr2g066840 1.0kb upstream 1.0kb upstream 3197 true chr2: 27945165-27948361 Medicago truncatula
Medtr2g066840 1.0kb upstream 1.0kb upstream 1000 false chr2: 27947362-27948361 Medicago truncatula
Medtr2g066840 1.0kb downstream 1.0kb downstream 3197 true chr2: 27944165-27947361 Medicago truncatula
Medtr2g066840 1.0kb downstream 1.0kb downstream 1000 false chr2: 27944165-27945164 Medicago truncatula
Medtr2g066840 2.0kb upstream 2.0kb upstream 4197 true chr2: 27945165-27949361 Medicago truncatula
Medtr2g066840 2.0kb upstream 2.0kb upstream 2000 false chr2: 27947362-27949361 Medicago truncatula
Medtr2g066840 2.0kb downstream 2.0kb downstream 4197 true chr2: 27943165-27947361 Medicago truncatula
Medtr2g066840 2.0kb downstream 2.0kb downstream 2000 false chr2: 27943165-27945164 Medicago truncatula
Medtr2g066840 5.0kb upstream 5.0kb upstream 7197 true chr2: 27945165-27952361 Medicago truncatula
Medtr2g066840 5.0kb upstream 5.0kb upstream 5000 false chr2: 27947362-27952361 Medicago truncatula
Medtr2g066840 5.0kb downstream 5.0kb downstream 7197 true chr2: 27940165-27947361 Medicago truncatula
Medtr2g066840 5.0kb downstream 5.0kb downstream 5000 false chr2: 27940165-27945164 Medicago truncatula
Medtr2g066840 10.0kb upstream 10.0kb upstream 12197 true chr2: 27945165-27957361 Medicago truncatula
Medtr2g066840 10.0kb upstream 10.0kb upstream 10000 false chr2: 27947362-27957361 Medicago truncatula
Medtr2g066840 10.0kb downstream 10.0kb downstream 12197 true chr2: 27935165-27947361 Medicago truncatula
Medtr2g066840 10.0kb downstream 10.0kb downstream 10000 false chr2: 27935165-27945164 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028140 5273 Angiosperm View MSA
122258160 5265 Fabidae Singleton cluster - no MSA
124038644 5270 Rosid View MSA
123610915 5271 Pentapetalae View MSA
122645503 5272 Eudicot View MSA
121351439 5274 Embryophyte View MSA
123426817 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain